Difference between revisions of "TSS:Hg 233255.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|OST034= | |OST034= | ||
| − | |all_trans= | + | |all_trans=ENST00000681288.1:-87 ENST00000679385.1:-92 ENST00000649552.2:-92 ENST00000681406.1:-119 ENST00000680301.1:-119 ENST00000680560.1:122 ENST00000680935.1:-137 ENST00000679553.1:-137 ENST00000680537.1:193 ENST00000680757.1:242 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance=- | + | |distance=-87 |
|distance_to_tss=82 | |distance_to_tss=82 | ||
|end=58214827 | |end=58214827 | ||
| Line 10: | Line 10: | ||
|entrez_id=219959 | |entrez_id=219959 | ||
|gc_percent=0.422886 | |gc_percent=0.422886 | ||
| − | |gene_alias=OR11-232 | + | |gene_alias=OR11-232{{!}}OST034 |
|gene_description=olfactory receptor family 1 subfamily S member 1 (gene/pseudogene) | |gene_description=olfactory receptor family 1 subfamily S member 1 (gene/pseudogene) | ||
| − | |gene_id= | + | |gene_id=51338 |
| − | |gene_name= | + | |gene_name=membrane spanning 4-domains A4A |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:13371 |
| − | |gene_symbol= | + | |gene_symbol=MS4A4A |
| − | |gene_synonyms= | + | |gene_synonyms=CD20L1 MS4A7 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:13371 |
|nearest_ensembl=ENSG00000280204 | |nearest_ensembl=ENSG00000280204 | ||
|nearest_promoter_id=NM_001004458 | |nearest_promoter_id=NM_001004458 | ||
|nearest_refseq=NM_001004458 | |nearest_refseq=NM_001004458 | ||
|nearest_unigene=Hs.553645 | |nearest_unigene=Hs.553645 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=58214826 | |start=58214826 | ||
|start_of_center_position=60185795 | |start_of_center_position=60185795 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000681288.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_233255.1 | |tss_id=hg_233255.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 12:43, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 60185795 |
|---|---|
| End of the center position in the TSS region: | 60185796 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000681288.1 |
|---|---|
| Distance: | -87 |
| Num_trans: | 10 |
| All_trans: | ENST00000681288.1:-87 ENST00000679385.1:-92 ENST00000649552.2:-92 ENST00000681406.1:-119 ENST00000680301.1:-119 ENST00000680560.1:122 ENST00000680935.1:-137 ENST00000679553.1:-137 ENST00000680537.1:193 ENST00000680757.1:242 |
TATA-Box annotation
| Distance to TSS: | 82 |
|---|---|
| Nearest PromoterID: | NM_001004458 |
| Entrez ID: | 219959 |
| Nearest Unigene: | Hs.553645 |
| Nearest Refseq: | NM_001004458 |
| Nearest Ensembl: | ENSG00000280204 |
| Gene Name: | membrane spanning 4-domains A4A |
| Gene Alias: | OR11-232|OST034 |
| Gene Description: | olfactory receptor family 1 subfamily S member 1 (gene/pseudogene) |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.422886 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
