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Difference between revisions of "Template:PeakPage"

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<span class="section_head">TATA-Box annotation</span>
 
<span class="section_head">TATA-Box annotation</span>
 
<hr width="200px" size="2" noshade>
 
<hr width="200px" size="2" noshade>
<table style="width: 500px;"><tr><td>
+
<table style="width: 500px;">
<div style="width:32%; float:left;">
 
<table class="inner" >
 
 
<tr><th scope="row" class="item_label">Peak Score:</th><td>[[peak_score::{{{peak_score}}}]]</td></tr>
 
<tr><th scope="row" class="item_label">Peak Score:</th><td>[[peak_score::{{{peak_score}}}]]</td></tr>
 
<tr><th scope="row" class="item_label">Distance to TSS:</th><td>[[distance_to_tss::{{{distance_to_tss}}}]]</td></tr>
 
<tr><th scope="row" class="item_label">Distance to TSS:</th><td>[[distance_to_tss::{{{distance_to_tss}}}]]</td></tr>
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<tr><th scope="row" class="item_label">Nearest Refseq:</th><td>[[nearest_refseq::{{{nearest_refseq}}}]]</td></tr>
 
<tr><th scope="row" class="item_label">Nearest Refseq:</th><td>[[nearest_refseq::{{{nearest_refseq}}}]]</td></tr>
 
<tr><th scope="row" class="item_label">Nearest Ensembl:</th><td>[[nearest_ensembl::{{{nearest_ensembl}}}]]</td></tr>
 
<tr><th scope="row" class="item_label">Nearest Ensembl:</th><td>[[nearest_ensembl::{{{nearest_ensembl}}}]]</td></tr>
</table>
 
</div>
 
<div style="width:42%; float:left;">
 
<table class="inner" >
 
 
<tr><th scope="row" class="item_label">Gene Name:</th><td>[[gene_name::{{{gene_name}}}]]</td></tr>
 
<tr><th scope="row" class="item_label">Gene Name:</th><td>[[gene_name::{{{gene_name}}}]]</td></tr>
 
<tr><th scope="row" class="item_label">Gene Alias:</th><td>[[gene_alias::{{{gene_alias}}}]]</td></tr>
 
<tr><th scope="row" class="item_label">Gene Alias:</th><td>[[gene_alias::{{{gene_alias}}}]]</td></tr>
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<tr><th scope="row" class="item_label">GC%:</th><td>[[gc_percent::{{{gc_percent}}}]]</td></tr>
 
<tr><th scope="row" class="item_label">GC%:</th><td>[[gc_percent::{{{gc_percent}}}]]</td></tr>
 
<tr><th scope="row" class="item_label">TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):</th><td>[[tata_box::{{{tata_box}}}]]</td></tr>
 
<tr><th scope="row" class="item_label">TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):</th><td>[[tata_box::{{{tata_box}}}]]</td></tr>
</table>
 
</div></td></tr>
 
 
</table>
 
</table>
 
<br/>
 
<br/>

Revision as of 17:51, 7 February 2018



Basic information about the peak


PeakID:{{{peak_id}}}
Species:{{{species}}}
Chr:{{{chr}}}
Start:{{{start}}}
End:{{{end}}}
Strand:{{{strand}}}



TATA-Box annotation


Peak Score:{{{peak_score}}}
Distance to TSS:{{{distance_to_tss}}}
Nearest PromoterID:{{{nearest_promoter_id}}}
Entrez ID:{{{entrez_id}}}
Nearest Unigene:{{{nearest_unigene}}}
Nearest Refseq:{{{nearest_refseq}}}
Nearest Ensembl:{{{nearest_ensembl}}}
Gene Name:{{{gene_name}}}
Gene Alias:{{{gene_alias}}}
Gene Description:{{{gene_description}}}
Gene Type:{{{gene_type}}}
CpG%:{{{cpg_percent}}}
GC%:{{{gc_percent}}}
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):{{{tata_box}}}



Transcript annotation


Transcript_name:{{{transcript_name}}}
Distance:{{{distance}}}
Num_trans:{{{num_trans}}}
All_trans:{{{all_trans}}}



Gene and protein annotation


Transcript_name:{{{transcript_name}}}
Distance:{{{distance}}}
GeneID:{{{gene_id}}}
HGNC/MGI_ID:{{{hgnc_mgi_id}}}
UniProt_ID:{{{uniprot_id}}}
Gene_name:{{{gene_name}}}
Gene_symbol:{{{gene_symbol}}}
Gene_synonyms:{{{gene_synonyms}}}
Gene_source:{{{gene_source}}}



TSS classification


Chr:{{{chr}}}
Start:{{{start}}}
End:{{{end}}}
Strand:{{{strand}}}