Difference between revisions of "Template:PeakPage"
From referenceTSS
m |
|||
Line 42: | Line 42: | ||
<span class="section_head">TATA-Box annotation</span> | <span class="section_head">TATA-Box annotation</span> | ||
<hr width="200px" size="2" noshade> | <hr width="200px" size="2" noshade> | ||
− | <table style="width: 500px; | + | <table style="width: 500px;"> |
− | |||
− | |||
<tr><th scope="row" class="item_label">Peak Score:</th><td>[[peak_score::{{{peak_score}}}]]</td></tr> | <tr><th scope="row" class="item_label">Peak Score:</th><td>[[peak_score::{{{peak_score}}}]]</td></tr> | ||
<tr><th scope="row" class="item_label">Distance to TSS:</th><td>[[distance_to_tss::{{{distance_to_tss}}}]]</td></tr> | <tr><th scope="row" class="item_label">Distance to TSS:</th><td>[[distance_to_tss::{{{distance_to_tss}}}]]</td></tr> | ||
Line 52: | Line 50: | ||
<tr><th scope="row" class="item_label">Nearest Refseq:</th><td>[[nearest_refseq::{{{nearest_refseq}}}]]</td></tr> | <tr><th scope="row" class="item_label">Nearest Refseq:</th><td>[[nearest_refseq::{{{nearest_refseq}}}]]</td></tr> | ||
<tr><th scope="row" class="item_label">Nearest Ensembl:</th><td>[[nearest_ensembl::{{{nearest_ensembl}}}]]</td></tr> | <tr><th scope="row" class="item_label">Nearest Ensembl:</th><td>[[nearest_ensembl::{{{nearest_ensembl}}}]]</td></tr> | ||
− | |||
− | |||
− | |||
− | |||
<tr><th scope="row" class="item_label">Gene Name:</th><td>[[gene_name::{{{gene_name}}}]]</td></tr> | <tr><th scope="row" class="item_label">Gene Name:</th><td>[[gene_name::{{{gene_name}}}]]</td></tr> | ||
<tr><th scope="row" class="item_label">Gene Alias:</th><td>[[gene_alias::{{{gene_alias}}}]]</td></tr> | <tr><th scope="row" class="item_label">Gene Alias:</th><td>[[gene_alias::{{{gene_alias}}}]]</td></tr> | ||
Line 63: | Line 57: | ||
<tr><th scope="row" class="item_label">GC%:</th><td>[[gc_percent::{{{gc_percent}}}]]</td></tr> | <tr><th scope="row" class="item_label">GC%:</th><td>[[gc_percent::{{{gc_percent}}}]]</td></tr> | ||
<tr><th scope="row" class="item_label">TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):</th><td>[[tata_box::{{{tata_box}}}]]</td></tr> | <tr><th scope="row" class="item_label">TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):</th><td>[[tata_box::{{{tata_box}}}]]</td></tr> | ||
− | |||
− | |||
</table> | </table> | ||
<br/> | <br/> |
Revision as of 17:51, 7 February 2018
Basic information about the peak
|
TATA-Box annotation
Peak Score: | {{{peak_score}}} |
---|---|
Distance to TSS: | {{{distance_to_tss}}} |
Nearest PromoterID: | {{{nearest_promoter_id}}} |
Entrez ID: | {{{entrez_id}}} |
Nearest Unigene: | {{{nearest_unigene}}} |
Nearest Refseq: | {{{nearest_refseq}}} |
Nearest Ensembl: | {{{nearest_ensembl}}} |
Gene Name: | {{{gene_name}}} |
Gene Alias: | {{{gene_alias}}} |
Gene Description: | {{{gene_description}}} |
Gene Type: | {{{gene_type}}} |
CpG%: | {{{cpg_percent}}} |
GC%: | {{{gc_percent}}} |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): | {{{tata_box}}} |
Transcript annotation
Transcript_name: | {{{transcript_name}}} |
---|---|
Distance: | {{{distance}}} |
Num_trans: | {{{num_trans}}} |
All_trans: | {{{all_trans}}} |
Gene and protein annotation
|
TSS classification
Chr: | {{{chr}}} |
---|---|
Start: | {{{start}}} |
End: | {{{end}}} |
Strand: | {{{strand}}} |