Difference between revisions of "TSS:Hg 154763.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000542274.5:20 uc059whp.1:20 AK296968:20 AK312554:22 AK225396:29 X63629:46 AB527800:96 EU832319:97 EU832404:97 KJ904433:97 ENST00000429102.6:-278...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HJMD= | ||
| + | |PCAD= | ||
|all_trans=ENST00000542274.5:20 uc059whp.1:20 AK296968:20 AK312554:22 AK225396:29 X63629:46 AB527800:96 EU832319:97 EU832404:97 KJ904433:97 ENST00000429102.6:-278 uc059who.1:-278 BC014462:-278 ENST00000566808.2:356 uc059whq.1:356 ENST00000264012.8:-435 NM_001793:-435 NM_001317195:-435 NM_001317196:-435 uc002ewf.3:-435 BC041846:-435 | |all_trans=ENST00000542274.5:20 uc059whp.1:20 AK296968:20 AK312554:22 AK225396:29 X63629:46 AB527800:96 EU832319:97 EU832404:97 KJ904433:97 ENST00000429102.6:-278 uc059who.1:-278 BC014462:-278 ENST00000566808.2:356 uc059whq.1:356 ENST00000264012.8:-435 NM_001793:-435 NM_001317195:-435 NM_001317196:-435 uc002ewf.3:-435 BC041846:-435 | ||
|chr=chr16 | |chr=chr16 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=440 | |distance_to_tss=440 | ||
|end=68645281 | |end=68645281 | ||
| + | |end_of_center_position=68645276 | ||
|entrez_id=1001 | |entrez_id=1001 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=CDHP | + | |gene_alias=CDHP |
|gene_description=cadherin 3 | |gene_description=cadherin 3 | ||
|gene_id=1001 | |gene_id=1001 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=68645270 | |start=68645270 | ||
| + | |start_of_center_position=68645275 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000542274.5 uc059whp.1 AK296968 | |transcript_name=ENST00000542274.5 uc059whp.1 AK296968 | ||
Revision as of 20:34, 14 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 68645275 |
|---|---|
| End of the center position in the TSS region: | 68645276 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000542274.5 uc059whp.1 AK296968 |
|---|---|
| Distance: | 20 |
| Num_trans: | 21 |
| All_trans: | ENST00000542274.5:20 uc059whp.1:20 AK296968:20 AK312554:22 AK225396:29 X63629:46 AB527800:96 EU832319:97 EU832404:97 KJ904433:97 ENST00000429102.6:-278 uc059who.1:-278 BC014462:-278 ENST00000566808.2:356 uc059whq.1:356 ENST00000264012.8:-435 NM_001793:-435 NM_001317195:-435 NM_001317196:-435 uc002ewf.3:-435 BC041846:-435 |
TATA-Box annotation
| Distance to TSS: | 440 |
|---|---|
| Nearest PromoterID: | NM_001317196 |
| Entrez ID: | 1001 |
| Nearest Unigene: | Hs.191842 |
| Nearest Refseq: | NM_001793 |
| Nearest Ensembl: | ENSG00000062038 |
| Gene Name: | cadherin 15; cadherin 3 |
| Gene Alias: | CDHP |
| Gene Description: | cadherin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
