Difference between revisions of "TSS:Hg 40837.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|NCRNA00190= | |NCRNA00190= | ||
| − | |all_trans=ENST00000414938.1:24 NR_004428 | + | |all_trans=ENST00000414938.1:24 NR_004428:24 BC039547:24 |
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 10: | Line 10: | ||
|entrez_id=100126791 | |entrez_id=100126791 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
| − | |gene_alias=EGO | + | |gene_alias=EGO{{!}}NCRNA00190 |
| − | |gene_description=eosinophil granule ontogeny transcript | + | |gene_description=eosinophil granule ontogeny transcript |
|gene_id=100126791 | |gene_id=100126791 | ||
| − | |gene_name=eosinophil granule ontogeny transcript | + | |gene_name=eosinophil granule ontogeny transcript |
|gene_source=HGNC:37129 | |gene_source=HGNC:37129 | ||
|gene_symbol=EGOT | |gene_symbol=EGOT | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NR_004428 | |nearest_refseq=NR_004428 | ||
|nearest_unigene=Hs.663059 | |nearest_unigene=Hs.663059 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=4751613 | |start=4751613 | ||
|start_of_center_position=4751620 | |start_of_center_position=4751620 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=60(GGCTTTTTAAAA,-,0.00) |
| − | |transcript_name=ENST00000414938.1 NR_004428 | + | |transcript_name=ENST00000414938.1 NR_004428 BC039547 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_40837.1 | |tss_id=hg_40837.1 | ||
Revision as of 23:19, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 4751620 |
|---|---|
| End of the center position in the TSS region: | 4751621 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000414938.1 NR_004428 BC039547 |
|---|---|
| Distance: | 24 |
| Num_trans: | 3 |
| All_trans: | ENST00000414938.1:24 NR_004428:24 BC039547:24 |
TATA-Box annotation
| Distance to TSS: | -31 |
|---|---|
| Nearest PromoterID: | NR_004428 |
| Entrez ID: | 100126791 |
| Nearest Unigene: | Hs.663059 |
| Nearest Refseq: | NR_004428 |
| Nearest Ensembl: | ENSG00000235947 |
| Gene Name: | eosinophil granule ontogeny transcript |
| Gene Alias: | EGO|NCRNA00190 |
| Gene Description: | eosinophil granule ontogeny transcript |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 60(GGCTTTTTAAAA,-,0.00) |
