Difference between revisions of "TSS:Hg 100561.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=130 |entrez_id=7415 |gc_percent=0.666667 |gene_alias=ALS14|CMT2Y|HEL-220|HEL-S-70|IBMPFD|IBMPFD1|TERA|p97 |gene_description=val...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CMT2Y= | ||
| + | |HEL-220= | ||
| + | |HEL-S-70= | ||
| + | |IBMPFD= | ||
| + | |IBMPFD1= | ||
| + | |TERA= | ||
| + | |all_trans=ENST00000448530.5:0 uc064svs.1:0 BC096751:0 AK312310:0 BC012195:-5 BC017171:-5 BC021055:-5 FJ224344:22 AF100752:22 FJ224352:22 BC023563:34 BC110913:37 ENST00000493886.5:40 uc064svo.1:40 BC122550:40 BC121794:40 NM_007126:-107 AB385152:232 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=0 | ||
|distance_to_tss=130 | |distance_to_tss=130 | ||
| + | |end=35072635 | ||
|entrez_id=7415 | |entrez_id=7415 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias=ALS14|CMT2Y|HEL-220|HEL-S-70|IBMPFD|IBMPFD1|TERA|p97 | |gene_alias=ALS14|CMT2Y|HEL-220|HEL-S-70|IBMPFD|IBMPFD1|TERA|p97 | ||
|gene_description=valosin containing protein | |gene_description=valosin containing protein | ||
| − | |gene_name=VCP | + | |gene_id=7415 |
| + | |gene_name=valosin containing protein | ||
| + | |gene_source=HGNC:12666 | ||
| + | |gene_symbol=VCP | ||
| + | |gene_synonyms=IBMPFD p97 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12666 | ||
|nearest_ensembl=ENSG00000165280 | |nearest_ensembl=ENSG00000165280 | ||
|nearest_promoter_id=NM_007126 | |nearest_promoter_id=NM_007126 | ||
|nearest_refseq=NM_007126 | |nearest_refseq=NM_007126 | ||
|nearest_unigene=Hs.529782 | |nearest_unigene=Hs.529782 | ||
| + | |num_trans=18 | ||
| + | |p97= | ||
| + | |species=human | ||
| + | |start=35072588 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000448530.5 uc064svs.1 BC096751 AK312310 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100561.1 | |tss_id=hg_100561.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=C9IZA5 | ||
}} | }} | ||
Revision as of 17:11, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000448530.5 uc064svs.1 BC096751 AK312310 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000448530.5:0 uc064svs.1:0 BC096751:0 AK312310:0 BC012195:-5 BC017171:-5 BC021055:-5 FJ224344:22 AF100752:22 FJ224352:22 BC023563:34 BC110913:37 ENST00000493886.5:40 uc064svo.1:40 BC122550:40 BC121794:40 NM_007126:-107 AB385152:232 |
TATA-Box annotation
| Distance to TSS: | 130 |
|---|---|
| Nearest PromoterID: | NM_007126 |
| Entrez ID: | 7415 |
| Nearest Unigene: | Hs.529782 |
| Nearest Refseq: | NM_007126 |
| Nearest Ensembl: | ENSG00000165280 |
| Gene Name: | valosin containing protein |
| Gene Alias: | ALS14 |
| Gene Description: | valosin containing protein |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
