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Difference between revisions of "Template:PeakPage"

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</html>
 
</html>
 
<span class="section_head">Basic information about the peak</span>
 
<span class="section_head">Basic information about the peak</span>
<hr width="300px" size="2" noshade>
+
<hr width="300px" size="2" align="left" noshade>
 
<table width="300px"><tr><td>
 
<table width="300px"><tr><td>
 
<div style="width:42%; float:left;">
 
<div style="width:42%; float:left;">
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</table>
 
</table>
 
</div></td></tr>
 
</div></td></tr>
</table>
 
<br/>
 
<br/>
 
<span class="section_head">TATA-Box annotation</span>
 
<hr width="200px" size="2" noshade>
 
<table class="inner" style="width: 600px;table-layout:fixed;">
 
<tr><th scope="row" class="item_label_long">Peak Score:</th><td class="ttb">[[peak_score::{{{peak_score}}}]]</td></tr>
 
<tr><th scope="row" class="item_label_long">Distance to TSS:</th><td class="ttb">[[distance_to_tss::{{{distance_to_tss}}}]]</td></tr>
 
<tr><th scope="row" class="item_label_long">Nearest PromoterID:</th><td class="ttb">[[nearest_promoter_id::{{{nearest_promoter_id}}}]]</td></tr>
 
<tr><th scope="row" class="item_label_long">Entrez ID:</th><td class="ttb">[[entrez_id::{{{entrez_id}}}]]</td></tr>
 
<tr><th scope="row" class="item_label_long">Nearest Unigene:</th><td class="ttb">[[nearest_unigene::{{{nearest_unigene}}}]]</td></tr>
 
<tr><th scope="row" class="item_label_long">Nearest Refseq:</th><td class="ttb">[[nearest_refseq::{{{nearest_refseq}}}]]</td></tr>
 
<tr><th scope="row" class="item_label_long">Nearest Ensembl:</th><td class="ttb">[[nearest_ensembl::{{{nearest_ensembl}}}]]</td></tr>
 
<tr><th scope="row" class="item_label_long">Gene Name:</th><td class="ttb">[[gene_name::{{{gene_name}}}]]</td></tr>
 
<tr><th scope="row" class="item_label_long">Gene Alias:</th><td class="ttb">[[gene_alias::{{{gene_alias}}}]]</td></tr>
 
<tr><th scope="row" class="item_label_long">Gene Description:</th><td class="ttb">[[gene_description::{{{gene_description}}}]]</td></tr>
 
<tr><th scope="row" class="item_label_long">Gene Type:</th><td class="ttb">[[gene_type::{{{gene_type}}}]]</td></tr>
 
<tr><th scope="row" class="item_label_long">CpG%:</th><td class="ttb">[[cpg_percent::{{{cpg_percent}}}]]</td></tr>
 
<tr><th scope="row" class="item_label_long">GC%:</th><td class="ttb">[[gc_percent::{{{gc_percent}}}]]</td></tr>
 
<tr><th scope="row" class="item_label_long">TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):</th><td class="ttb">[[tata_box::{{{tata_box}}}]]</td></tr>
 
</table>
 
<br/>
 
<br/>
 
<span class="section_head">Transcript annotation</span>
 
<hr width="200px" size="2" noshade>
 
<table class="inner" border="0" >
 
<tr><th scope="row" align="left">Transcript_name:</th><td>[[transcript_name::{{{transcript_name}}}]]</td></tr>
 
<tr><th scope="row" align="left">Distance:</th><td>[[distance::{{{distance}}}]]</td></tr>
 
<tr><th scope="row" align="left">Num_trans:</th><td>[[num_trans::{{{num_trans}}}]]</td></tr>
 
<tr><th scope="row" align="left">All_trans:</th><td>[[all_trans::{{{all_trans}}}]]</td></tr>
 
 
</table>
 
</table>
 
<br/>
 
<br/>
 
<br/>
 
<br/>
 
<span class="section_head">Gene and protein annotation</span>
 
<span class="section_head">Gene and protein annotation</span>
<hr width="270px" size="2" noshade>
+
<hr width="270px" size="2" align="left" noshade>
 
<table border="0" ><tr><td>
 
<table border="0" ><tr><td>
 
<div style="width:42%; float:left;">
 
<div style="width:42%; float:left;">
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</table>
 
</table>
 
</div></td></tr>
 
</div></td></tr>
 +
</table>
 +
<br/>
 +
<br/>
 +
<span class="section_head">Transcript annotation</span>
 +
<hr width="200px" size="2" align="left" noshade>
 +
<table class="inner" border="0" >
 +
<tr><th scope="row" align="left">Transcript_name:</th><td>[[transcript_name::{{{transcript_name}}}]]</td></tr>
 +
<tr><th scope="row" align="left">Distance:</th><td>[[distance::{{{distance}}}]]</td></tr>
 +
<tr><th scope="row" align="left">Num_trans:</th><td>[[num_trans::{{{num_trans}}}]]</td></tr>
 +
<tr><th scope="row" align="left">All_trans:</th><td>[[all_trans::{{{all_trans}}}]]</td></tr>
 
</table>
 
</table>
 
<br/>
 
<br/>
 
<br/>
 
<br/>
 
<span class="section_head">TSS classification</span>
 
<span class="section_head">TSS classification</span>
<hr width="170px" size="2" noshade>
+
<hr width="170px" size="2" align="left" noshade>
 
<table border="0" class="inner">
 
<table border="0" class="inner">
 
<tr><th scope="row" align="left">Chr:</th><td>[[chr::{{{chr}}}]]</td></tr>
 
<tr><th scope="row" align="left">Chr:</th><td>[[chr::{{{chr}}}]]</td></tr>
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<tr><th scope="row" align="left">Strand:</th><td>[[strand::{{{strand}}}]]</td></tr>
 
<tr><th scope="row" align="left">Strand:</th><td>[[strand::{{{strand}}}]]</td></tr>
 
</table>
 
</table>
 +
<br/>
 +
<br/>
 +
<span class="section_head">TATA-Box annotation</span>
 +
<hr width="200px" size="2" align="left" noshade>
 +
<table class="inner" style="width: 600px;table-layout:fixed;">
 +
<tr><th scope="row" class="item_label_long">Peak Score:</th><td class="ttb">[[peak_score::{{{peak_score}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label_long">Distance to TSS:</th><td class="ttb">[[distance_to_tss::{{{distance_to_tss}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label_long">Nearest PromoterID:</th><td class="ttb">[[nearest_promoter_id::{{{nearest_promoter_id}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label_long">Entrez ID:</th><td class="ttb">[[entrez_id::{{{entrez_id}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label_long">Nearest Unigene:</th><td class="ttb">[[nearest_unigene::{{{nearest_unigene}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label_long">Nearest Refseq:</th><td class="ttb">[[nearest_refseq::{{{nearest_refseq}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label_long">Nearest Ensembl:</th><td class="ttb">[[nearest_ensembl::{{{nearest_ensembl}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label_long">Gene Name:</th><td class="ttb">[[gene_name::{{{gene_name}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label_long">Gene Alias:</th><td class="ttb">[[gene_alias::{{{gene_alias}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label_long">Gene Description:</th><td class="ttb">[[gene_description::{{{gene_description}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label_long">Gene Type:</th><td class="ttb">[[gene_type::{{{gene_type}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label_long">CpG%:</th><td class="ttb">[[cpg_percent::{{{cpg_percent}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label_long">GC%:</th><td class="ttb">[[gc_percent::{{{gc_percent}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label_long">TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):</th><td class="ttb">[[tata_box::{{{tata_box}}}]]</td></tr>
 +
</table>
 +
 
<!--
 
<!--
 
{{Fontsize|3|Basic information about the peak}}<br><br>
 
{{Fontsize|3|Basic information about the peak}}<br><br>

Revision as of 16:26, 8 February 2018



Basic information about the peak


PeakID:{{{peak_id}}}
Species:{{{species}}}
Chr:{{{chr}}}
Start:{{{start}}}
End:{{{end}}}
Strand:{{{strand}}}



Gene and protein annotation


Transcript_name:{{{transcript_name}}}
Distance:{{{distance}}}
GeneID:{{{gene_id}}}
HGNC/MGI_ID:{{{hgnc_mgi_id}}}
UniProt_ID:{{{uniprot_id}}}
Gene_name:{{{gene_name}}}
Gene_symbol:{{{gene_symbol}}}
Gene_synonyms:{{{gene_synonyms}}}
Gene_source:{{{gene_source}}}



Transcript annotation


Transcript_name:{{{transcript_name}}}
Distance:{{{distance}}}
Num_trans:{{{num_trans}}}
All_trans:{{{all_trans}}}



TSS classification


Chr:{{{chr}}}
Start:{{{start}}}
End:{{{end}}}
Strand:{{{strand}}}



TATA-Box annotation


Peak Score:{{{peak_score}}}
Distance to TSS:{{{distance_to_tss}}}
Nearest PromoterID:{{{nearest_promoter_id}}}
Entrez ID:{{{entrez_id}}}
Nearest Unigene:{{{nearest_unigene}}}
Nearest Refseq:{{{nearest_refseq}}}
Nearest Ensembl:{{{nearest_ensembl}}}
Gene Name:{{{gene_name}}}
Gene Alias:{{{gene_alias}}}
Gene Description:{{{gene_description}}}
Gene Type:{{{gene_type}}}
CpG%:{{{cpg_percent}}}
GC%:{{{gc_percent}}}
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):{{{tata_box}}}