Difference between revisions of "Template:PeakPage"
From referenceTSS
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<span class="section_head">Basic information about the peak</span> | <span class="section_head">Basic information about the peak</span> | ||
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<table width="300px"><tr><td> | <table width="300px"><tr><td> | ||
<div style="width:42%; float:left;"> | <div style="width:42%; float:left;"> | ||
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</table> | </table> | ||
</div></td></tr> | </div></td></tr> | ||
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</table> | </table> | ||
<br/> | <br/> | ||
<br/> | <br/> | ||
<span class="section_head">Gene and protein annotation</span> | <span class="section_head">Gene and protein annotation</span> | ||
− | <hr width="270px" size="2" noshade> | + | <hr width="270px" size="2" align="left" noshade> |
<table border="0" ><tr><td> | <table border="0" ><tr><td> | ||
<div style="width:42%; float:left;"> | <div style="width:42%; float:left;"> | ||
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</table> | </table> | ||
</div></td></tr> | </div></td></tr> | ||
+ | </table> | ||
+ | <br/> | ||
+ | <br/> | ||
+ | <span class="section_head">Transcript annotation</span> | ||
+ | <hr width="200px" size="2" align="left" noshade> | ||
+ | <table class="inner" border="0" > | ||
+ | <tr><th scope="row" align="left">Transcript_name:</th><td>[[transcript_name::{{{transcript_name}}}]]</td></tr> | ||
+ | <tr><th scope="row" align="left">Distance:</th><td>[[distance::{{{distance}}}]]</td></tr> | ||
+ | <tr><th scope="row" align="left">Num_trans:</th><td>[[num_trans::{{{num_trans}}}]]</td></tr> | ||
+ | <tr><th scope="row" align="left">All_trans:</th><td>[[all_trans::{{{all_trans}}}]]</td></tr> | ||
</table> | </table> | ||
<br/> | <br/> | ||
<br/> | <br/> | ||
<span class="section_head">TSS classification</span> | <span class="section_head">TSS classification</span> | ||
− | <hr width="170px" size="2" noshade> | + | <hr width="170px" size="2" align="left" noshade> |
<table border="0" class="inner"> | <table border="0" class="inner"> | ||
<tr><th scope="row" align="left">Chr:</th><td>[[chr::{{{chr}}}]]</td></tr> | <tr><th scope="row" align="left">Chr:</th><td>[[chr::{{{chr}}}]]</td></tr> | ||
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<tr><th scope="row" align="left">Strand:</th><td>[[strand::{{{strand}}}]]</td></tr> | <tr><th scope="row" align="left">Strand:</th><td>[[strand::{{{strand}}}]]</td></tr> | ||
</table> | </table> | ||
+ | <br/> | ||
+ | <br/> | ||
+ | <span class="section_head">TATA-Box annotation</span> | ||
+ | <hr width="200px" size="2" align="left" noshade> | ||
+ | <table class="inner" style="width: 600px;table-layout:fixed;"> | ||
+ | <tr><th scope="row" class="item_label_long">Peak Score:</th><td class="ttb">[[peak_score::{{{peak_score}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label_long">Distance to TSS:</th><td class="ttb">[[distance_to_tss::{{{distance_to_tss}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label_long">Nearest PromoterID:</th><td class="ttb">[[nearest_promoter_id::{{{nearest_promoter_id}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label_long">Entrez ID:</th><td class="ttb">[[entrez_id::{{{entrez_id}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label_long">Nearest Unigene:</th><td class="ttb">[[nearest_unigene::{{{nearest_unigene}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label_long">Nearest Refseq:</th><td class="ttb">[[nearest_refseq::{{{nearest_refseq}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label_long">Nearest Ensembl:</th><td class="ttb">[[nearest_ensembl::{{{nearest_ensembl}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label_long">Gene Name:</th><td class="ttb">[[gene_name::{{{gene_name}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label_long">Gene Alias:</th><td class="ttb">[[gene_alias::{{{gene_alias}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label_long">Gene Description:</th><td class="ttb">[[gene_description::{{{gene_description}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label_long">Gene Type:</th><td class="ttb">[[gene_type::{{{gene_type}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label_long">CpG%:</th><td class="ttb">[[cpg_percent::{{{cpg_percent}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label_long">GC%:</th><td class="ttb">[[gc_percent::{{{gc_percent}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label_long">TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):</th><td class="ttb">[[tata_box::{{{tata_box}}}]]</td></tr> | ||
+ | </table> | ||
+ | |||
<!-- | <!-- | ||
{{Fontsize|3|Basic information about the peak}}<br><br> | {{Fontsize|3|Basic information about the peak}}<br><br> |
Revision as of 16:26, 8 February 2018
Basic information about the peak
|
Gene and protein annotation
|
Transcript annotation
Transcript_name: | {{{transcript_name}}} |
---|---|
Distance: | {{{distance}}} |
Num_trans: | {{{num_trans}}} |
All_trans: | {{{all_trans}}} |
TSS classification
Chr: | {{{chr}}} |
---|---|
Start: | {{{start}}} |
End: | {{{end}}} |
Strand: | {{{strand}}} |
TATA-Box annotation
Peak Score: | {{{peak_score}}} |
---|---|
Distance to TSS: | {{{distance_to_tss}}} |
Nearest PromoterID: | {{{nearest_promoter_id}}} |
Entrez ID: | {{{entrez_id}}} |
Nearest Unigene: | {{{nearest_unigene}}} |
Nearest Refseq: | {{{nearest_refseq}}} |
Nearest Ensembl: | {{{nearest_ensembl}}} |
Gene Name: | {{{gene_name}}} |
Gene Alias: | {{{gene_alias}}} |
Gene Description: | {{{gene_description}}} |
Gene Type: | {{{gene_type}}} |
CpG%: | {{{cpg_percent}}} |
GC%: | {{{gc_percent}}} |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): | {{{tata_box}}} |