Difference between revisions of "TSS:Hg 234703.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=BC067862:-106 ENST00000546421.1:-146 NR_027157:-162 ENST00000548760.2:-358 | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-106 |
|distance_to_tss=7286 | |distance_to_tss=7286 | ||
|end=9072468 | |end=9072468 | ||
| Line 9: | Line 10: | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description=A2M antisense RNA 1 | + | |gene_description=A2M antisense RNA 1 |
| − | |gene_name= | + | |gene_id=100128191 |
| + | |gene_name=TMPO antisense RNA 1 | ||
| + | |gene_source=HGNC:44158 | ||
| + | |gene_symbol=TMPO-AS1 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:44158 | ||
|nearest_ensembl=ENSG00000245105 | |nearest_ensembl=ENSG00000245105 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_137425 |
|nearest_refseq=NR_026971 | |nearest_refseq=NR_026971 | ||
|nearest_unigene=Hs.592432 | |nearest_unigene=Hs.592432 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=9072457 | |start=9072457 | ||
|start_of_center_position=98516062 | |start_of_center_position=98516062 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-10(CCTTTTCTGGGA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=BC067862 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_234703.1 | |tss_id=hg_234703.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 13:16, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 98516062 |
|---|---|
| End of the center position in the TSS region: | 98516063 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC067862 |
|---|---|
| Distance: | -106 |
| Num_trans: | 4 |
| All_trans: | BC067862:-106 ENST00000546421.1:-146 NR_027157:-162 ENST00000548760.2:-358 |
TATA-Box annotation
| Distance to TSS: | 7286 |
|---|---|
| Nearest PromoterID: | NR_137425 |
| Entrez ID: | 144571 |
| Nearest Unigene: | Hs.592432 |
| Nearest Refseq: | NR_026971 |
| Nearest Ensembl: | ENSG00000245105 |
| Gene Name: | TMPO antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | A2M antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -10(CCTTTTCTGGGA,+,0.00) |
