Difference between revisions of "TSS:Hg 100599.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=331 |entrez_id=27240 |gc_percent=0.646766 |gene_alias=SIT|SIT-R |gene_description=signaling threshold regulating transmembrane a...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |SIT-R= | ||
| + | |all_trans=AK093793:-41 ENST00000486859.5:106 uc064sxp.1:106 AB527705:-194 ENST00000474403.1:-248 uc064sxq.1:-248 AK314758:-269 ENST00000259608.7:-278 uc003zxe.3:-278 AJ010059:-278 JQ924063:-278 BC102029:-286 BC104491:-286 BC107484:-286 ENST00000618781.1:-288 NM_014450:-288 uc064sxo.1:-288 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=-41 | ||
|distance_to_tss=331 | |distance_to_tss=331 | ||
| + | |end=35650662 | ||
|entrez_id=27240 | |entrez_id=27240 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_014450 | |nearest_refseq=NM_014450 | ||
|nearest_unigene=Hs.88012 | |nearest_unigene=Hs.88012 | ||
| + | |num_trans=17 | ||
| + | |species=human | ||
| + | |start=35650575 | ||
| + | |strand=- | ||
|tata_box="19(CCTCTTAGGGGC,+,0.00)" | |tata_box="19(CCTCTTAGGGGC,+,0.00)" | ||
| + | |transcript_name=AK093793 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100599.1 | |tss_id=hg_100599.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 17:12, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK093793 |
|---|---|
| Distance: | -41 |
| Num_trans: | 17 |
| All_trans: | AK093793:-41 ENST00000486859.5:106 uc064sxp.1:106 AB527705:-194 ENST00000474403.1:-248 uc064sxq.1:-248 AK314758:-269 ENST00000259608.7:-278 uc003zxe.3:-278 AJ010059:-278 JQ924063:-278 BC102029:-286 BC104491:-286 BC107484:-286 ENST00000618781.1:-288 NM_014450:-288 uc064sxo.1:-288 |
TATA-Box annotation
| Distance to TSS: | 331 |
|---|---|
| Nearest PromoterID: | NM_014450 |
| Entrez ID: | 27240 |
| Nearest Unigene: | Hs.88012 |
| Nearest Refseq: | NM_014450 |
| Nearest Ensembl: | ENSG00000137078 |
| Gene Name: | SIT1 |
| Gene Alias: | SIT |
| Gene Description: | signaling threshold regulating transmembrane adaptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "19(CCTCTTAGGGGC,+,0.00)" |
