Difference between revisions of "TSS:Hg 134533.1"
From referenceTSS
| Line 7: | Line 7: | ||
|RPO1-3= | |RPO1-3= | ||
|TCS2= | |TCS2= | ||
| − | |all_trans=ENST00000621089.2 | + | |all_trans=ENST00000637180.1:0 ENST00000621089.2:15 AK307356:17 ENST00000626064.1:-156 ENST00000627604.1:-171 NM_001206559:-171 NM_001374407:-171 ENST00000626929.1:-172 ENST00000637389.1:261 |
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=180 | |distance_to_tss=180 | ||
|end=27620932 | |end=27620932 | ||
| Line 16: | Line 16: | ||
|entrez_id=51082 | |entrez_id=51082 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias=AC19 | + | |gene_alias=AC19{{!}}POLR1C{{!}}RPA16{{!}}RPA9{{!}}RPAC2{{!}}RPC16{{!}}RPO1-3{{!}}TCS2 |
| − | |gene_description=RNA polymerase I subunit D | + | |gene_description=RNA polymerase I and III subunit D |
|gene_id=51082 | |gene_id=51082 | ||
| − | |gene_name=polymerase | + | |gene_name=RNA polymerase I and III subunit D |
|gene_source=HGNC:20422 | |gene_source=HGNC:20422 | ||
|gene_symbol=POLR1D | |gene_symbol=POLR1D | ||
| − | |gene_synonyms=MGC9850 RPA16 RPA9 RPAC2 RPO1-3 | + | |gene_synonyms=AC19 MGC9850 RPA16 RPA9 RPAC2 RPO1-3 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:20422 | |hgnc_mgi_id=HGNC:20422 | ||
| Line 29: | Line 29: | ||
|nearest_refseq=NM_015972 | |nearest_refseq=NM_015972 | ||
|nearest_unigene=Hs.507584 | |nearest_unigene=Hs.507584 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=27620913 | |start=27620913 | ||
|start_of_center_position=27620922 | |start_of_center_position=27620922 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000637180.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_134533.1 | |tss_id=hg_134533.1 | ||
Revision as of 05:30, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 27620922 |
|---|---|
| End of the center position in the TSS region: | 27620923 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000637180.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | ENST00000637180.1:0 ENST00000621089.2:15 AK307356:17 ENST00000626064.1:-156 ENST00000627604.1:-171 NM_001206559:-171 NM_001374407:-171 ENST00000626929.1:-172 ENST00000637389.1:261 |
TATA-Box annotation
| Distance to TSS: | 180 |
|---|---|
| Nearest PromoterID: | NM_001206559 |
| Entrez ID: | 51082 |
| Nearest Unigene: | Hs.507584 |
| Nearest Refseq: | NM_015972 |
| Nearest Ensembl: | ENSG00000186184 |
| Gene Name: | RNA polymerase I and III subunit D |
| Gene Alias: | AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2 |
| Gene Description: | RNA polymerase I and III subunit D |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
