Difference between revisions of "TSS:Hg 100631.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=130 |entrez_id=7169 |gc_percent=0.756219 |gene_alias=AMCD1|DA1|DA2B|HEL-S-273|NEM4|TMSB |gene_description=tropomyosin 2 (beta) |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |DA1= | ||
| + | |DA2B= | ||
| + | |HEL-S-273= | ||
| + | |NEM4= | ||
| + | |TMSB= | ||
| + | |all_trans=ENST00000360958.6:0 ENST00000604975.1:0 uc003zxs.4:0 uc064syh.1:0 AK223258:0 M12125:0 X06825:0 AK304803:0 AK300249:0 AK294522:0 ENST00000329305.6:6 uc064syd.1:6 M74817:13 M75165:13 ENST00000378300.9:16 uc064syc.1:16 ENST00000471212.5:19 uc064syf.1:19 BC011776:43 DQ892908:100 DQ896159:100 KJ892308:101 KR710416:101 KR710417:101 KR710418:101 KR710419:101 EU106177:102 AK130045:116 NM_213674:-123 NM_001301226:-123 NM_003289:-123 NM_001301227:-123 FJ224304:-123 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=0 | ||
|distance_to_tss=130 | |distance_to_tss=130 | ||
| + | |end=35689933 | ||
|entrez_id=7169 | |entrez_id=7169 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
|gene_alias=AMCD1|DA1|DA2B|HEL-S-273|NEM4|TMSB | |gene_alias=AMCD1|DA1|DA2B|HEL-S-273|NEM4|TMSB | ||
|gene_description=tropomyosin 2 (beta) | |gene_description=tropomyosin 2 (beta) | ||
| − | |gene_name=TPM2 | + | |gene_id=7169 |
| + | |gene_name=tropomyosin 2 (beta) | ||
| + | |gene_source=HGNC:12011 | ||
| + | |gene_symbol=TPM2 | ||
| + | |gene_synonyms=DA1 NEM4 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12011 | ||
|nearest_ensembl=ENSG00000198467 | |nearest_ensembl=ENSG00000198467 | ||
|nearest_promoter_id=NM_001301227 | |nearest_promoter_id=NM_001301227 | ||
|nearest_refseq=NM_003289 | |nearest_refseq=NM_003289 | ||
|nearest_unigene=Hs.300772 | |nearest_unigene=Hs.300772 | ||
| + | |num_trans=33 | ||
| + | |species=human | ||
| + | |start=35689918 | ||
| + | |strand=- | ||
|tata_box="-31(CCTTTTAGGCGC,+,0.00)" | |tata_box="-31(CCTTTTAGGCGC,+,0.00)" | ||
| + | |transcript_name=ENST00000360958.6 ENST00000604975.1 uc003zxs.4 uc064syh.1 AK223258 M12125 X06825 AK304803 AK300249 AK294522 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100631.1 | |tss_id=hg_100631.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DGC2 B4DTK3 B4E3P1 P07951 | ||
}} | }} | ||
Revision as of 17:13, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000360958.6 ENST00000604975.1 uc003zxs.4 uc064syh.1 AK223258 M12125 X06825 AK304803 AK300249 AK294522 |
|---|---|
| Distance: | 0 |
| Num_trans: | 33 |
| All_trans: | ENST00000360958.6:0 ENST00000604975.1:0 uc003zxs.4:0 uc064syh.1:0 AK223258:0 M12125:0 X06825:0 AK304803:0 AK300249:0 AK294522:0 ENST00000329305.6:6 uc064syd.1:6 M74817:13 M75165:13 ENST00000378300.9:16 uc064syc.1:16 ENST00000471212.5:19 uc064syf.1:19 BC011776:43 DQ892908:100 DQ896159:100 KJ892308:101 KR710416:101 KR710417:101 KR710418:101 KR710419:101 EU106177:102 AK130045:116 NM_213674:-123 NM_001301226:-123 NM_003289:-123 NM_001301227:-123 FJ224304:-123 |
TATA-Box annotation
| Distance to TSS: | 130 |
|---|---|
| Nearest PromoterID: | NM_001301227 |
| Entrez ID: | 7169 |
| Nearest Unigene: | Hs.300772 |
| Nearest Refseq: | NM_003289 |
| Nearest Ensembl: | ENSG00000198467 |
| Gene Name: | tropomyosin 2 (beta) |
| Gene Alias: | AMCD1 |
| Gene Description: | tropomyosin 2 (beta) |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-31(CCTTTTAGGCGC,+,0.00)" |
