Difference between revisions of "TSS:Mm 135192.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NM_001082546 | + | |all_trans=NM_001082546:54 ENSMUST00000146691.1:73 ENSMUST00000138796.1:76 ENSMUST00000096089.2:-111 BC100530:-111 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=cystatin domain containing 5 |
|gene_id=100034684 | |gene_id=100034684 | ||
| − | |gene_name= | + | |gene_name=cystatin domain containing 5 |
|gene_source=MGI:3696883 | |gene_source=MGI:3696883 | ||
| − | |gene_symbol= | + | |gene_symbol=Cstdc5 |
| − | |gene_synonyms= | + | |gene_synonyms=BC100530 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:3696883 | |hgnc_mgi_id=MGI:3696883 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001082546 | |nearest_refseq=NM_001082546 | ||
|nearest_unigene=Mm.383561 | |nearest_unigene=Mm.383561 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=36367623 | |start=36367623 | ||
|start_of_center_position=36367630 | |start_of_center_position=36367630 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=49(CCTTTAAAACCC,+,0.00) |
| − | |transcript_name=NM_001082546 | + | |transcript_name=NM_001082546 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_135192.1 | |tss_id=mm_135192.1 | ||
Revision as of 05:52, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 36367630 |
|---|---|
| End of the center position in the TSS region: | 36367631 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001082546 |
|---|---|
| Distance: | 54 |
| Num_trans: | 5 |
| All_trans: | NM_001082546:54 ENSMUST00000146691.1:73 ENSMUST00000138796.1:76 ENSMUST00000096089.2:-111 BC100530:-111 |
TATA-Box annotation
| Distance to TSS: | -60 |
|---|---|
| Nearest PromoterID: | NM_001082546 |
| Entrez ID: | 100034684 |
| Nearest Unigene: | Mm.383561 |
| Nearest Refseq: | NM_001082546 |
| Nearest Ensembl: | ENSMUSG00000071561 |
| Gene Name: | cystatin domain containing 5 |
| Gene Alias: | - |
| Gene Description: | cystatin domain containing 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 49(CCTTTAAAACCC,+,0.00) |
