Difference between revisions of "TSS:Hg 100643.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.085 |distance_to_tss=-349 |entrez_id=10488 |gc_percent=0.696517 |gene_alias=LUMAN|LZIP|sLZIP |gene_description=cAMP responsive element binding prote...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |LZIP= | ||
| + | |all_trans=ENST00000378192.2:-124 uc064syo.1:-124 BC020881:-124 AF177198:-151 AF078828:-169 BC042923:-201 BC021005:-381 AB028950:-390 ENST00000314888.9:-415 NM_006289:-415 uc003zxt.3:-415 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| + | |distance=-124 | ||
|distance_to_tss=-349 | |distance_to_tss=-349 | ||
| + | |end=35731980 | ||
|entrez_id=10488 | |entrez_id=10488 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
|gene_alias=LUMAN|LZIP|sLZIP | |gene_alias=LUMAN|LZIP|sLZIP | ||
|gene_description=cAMP responsive element binding protein 3 | |gene_description=cAMP responsive element binding protein 3 | ||
| − | |gene_name= | + | |gene_id=7094 |
| + | |gene_name=talin 1 | ||
| + | |gene_source=HGNC:11845 | ||
| + | |gene_symbol=TLN1 | ||
| + | |gene_synonyms=ILWEQ | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11845 | ||
|nearest_ensembl=ENSG00000107175 | |nearest_ensembl=ENSG00000107175 | ||
|nearest_promoter_id=NM_006368 | |nearest_promoter_id=NM_006368 | ||
|nearest_refseq=NM_006368 | |nearest_refseq=NM_006368 | ||
|nearest_unigene=Hs.522110 | |nearest_unigene=Hs.522110 | ||
| + | |num_trans=11 | ||
| + | |sLZIP= | ||
| + | |species=human | ||
| + | |start=35731962 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000378192.2 uc064syo.1 BC020881 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100643.1 | |tss_id=hg_100643.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:13, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000378192.2 uc064syo.1 BC020881 |
|---|---|
| Distance: | -124 |
| Num_trans: | 11 |
| All_trans: | ENST00000378192.2:-124 uc064syo.1:-124 BC020881:-124 AF177198:-151 AF078828:-169 BC042923:-201 BC021005:-381 AB028950:-390 ENST00000314888.9:-415 NM_006289:-415 uc003zxt.3:-415 |
TATA-Box annotation
| Distance to TSS: | -349 |
|---|---|
| Nearest PromoterID: | NM_006368 |
| Entrez ID: | 10488 |
| Nearest Unigene: | Hs.522110 |
| Nearest Refseq: | NM_006368 |
| Nearest Ensembl: | ENSG00000107175 |
| Gene Name: | talin 1 |
| Gene Alias: | LUMAN |
| Gene Description: | cAMP responsive element binding protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
