Difference between revisions of "TSS:Mm 137521.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=DQ701749:16 DQ562222:120 AK015366:156 DQ715499:165 DQ721369:183 DQ719327:305 DQ702378:305 DQ704721:308 DQ724271:335 DQ724422:382 | + | |all_trans=ENSMUST00000231637.1:0 NR_168745:0 NR_168746:0 NR_168743:0 NR_168742:0 NR_168739:0 NR_168740:0 NR_168741:0 NR_168744:0 ENSMUST00000232347.1:-3 ENSMUST00000232125.1:8 ENSMUST00000232171.1:-16 DQ701749:16 ENSMUST00000231336.1:-49 ENSMUST00000232675.1:-49 ENSMUST00000231462.1:-71 ENSMUST00000232070.1:-77 ENSMUST00000232363.1:-77 ENSMUST00000231707.1:-77 ENSMUST00000231262.1:-77 ENSMUST00000231770.1:-77 ENSMUST00000232497.1:-91 DQ562222:120 LF200981:155 MA436558:155 AK015366:156 ENSMUST00000232285.1:-160 DQ715499:165 DQ721369:183 DQ719327:305 DQ702378:305 DQ704721:308 DQ724271:335 DQ724422:382 LF250993:497 MA486570:497 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=-3189 | |distance_to_tss=-3189 | ||
|end=27325198 | |end=27325198 | ||
| Line 9: | Line 9: | ||
|entrez_id=102466818 | |entrez_id=102466818 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| − | |gene_alias=Gm27555 | + | |gene_alias=Gm27555{{!}}mmu-mir-7216 |
|gene_description=microRNA 7216 | |gene_description=microRNA 7216 | ||
| − | |gene_name= | + | |gene_id=100038429 |
| + | |gene_name=predicted gene 10505 | ||
| + | |gene_source=MGI:3642687 | ||
| + | |gene_symbol=Gm10505 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=MGI:3642687 | ||
|mmu-mir-7216= | |mmu-mir-7216= | ||
|nearest_ensembl=ENSMUSG00000099237 | |nearest_ensembl=ENSMUSG00000099237 | ||
| Line 18: | Line 23: | ||
|nearest_refseq=NR_106075 | |nearest_refseq=NR_106075 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=36 |
|species=mouse | |species=mouse | ||
|start=27325194 | |start=27325194 | ||
|start_of_center_position=27325196 | |start_of_center_position=27325196 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENSMUST00000231637.1 NR_168745 NR_168746 NR_168743 NR_168742 NR_168739 NR_168740 NR_168741 NR_168744 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_137521.1 | |tss_id=mm_137521.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 06:46, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 27325196 |
|---|---|
| End of the center position in the TSS region: | 27325197 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000231637.1 NR_168745 NR_168746 NR_168743 NR_168742 NR_168739 NR_168740 NR_168741 NR_168744 |
|---|---|
| Distance: | 0 |
| Num_trans: | 36 |
| All_trans: | ENSMUST00000231637.1:0 NR_168745:0 NR_168746:0 NR_168743:0 NR_168742:0 NR_168739:0 NR_168740:0 NR_168741:0 NR_168744:0 ENSMUST00000232347.1:-3 ENSMUST00000232125.1:8 ENSMUST00000232171.1:-16 DQ701749:16 ENSMUST00000231336.1:-49 ENSMUST00000232675.1:-49 ENSMUST00000231462.1:-71 ENSMUST00000232070.1:-77 ENSMUST00000232363.1:-77 ENSMUST00000231707.1:-77 ENSMUST00000231262.1:-77 ENSMUST00000231770.1:-77 ENSMUST00000232497.1:-91 DQ562222:120 LF200981:155 MA436558:155 AK015366:156 ENSMUST00000232285.1:-160 DQ715499:165 DQ721369:183 DQ719327:305 DQ702378:305 DQ704721:308 DQ724271:335 DQ724422:382 LF250993:497 MA486570:497 |
TATA-Box annotation
| Distance to TSS: | -3189 |
|---|---|
| Nearest PromoterID: | NR_106075 |
| Entrez ID: | 102466818 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_106075 |
| Nearest Ensembl: | ENSMUSG00000099237 |
| Gene Name: | predicted gene 10505 |
| Gene Alias: | Gm27555|mmu-mir-7216 |
| Gene Description: | microRNA 7216 |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
