Difference between revisions of "TSS:Hg 146610.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000619314.1:0 | + | |all_trans=ENST00000619314.1:0 ENST00000670332.1:0 ENST00000659570.1:0 BC014238:0 BC004103:13 LF349296:20 MA584873:20 LF349297:140 MA584874:140 ENST00000560359.1:322 ENST00000668321.1:454 ENST00000667317.1:459 ENST00000499624.3:461 BX537481:461 ENST00000648591.1:470 |
|chr=chr15 | |chr=chr15 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=GABPB1 intronic transcript |
|gene_id=100129387 | |gene_id=100129387 | ||
|gene_name=GABPB1 antisense RNA 1 | |gene_name=GABPB1 antisense RNA 1 | ||
| Line 18: | Line 18: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:44157 | |hgnc_mgi_id=HGNC:44157 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000285410 |
|nearest_promoter_id=NR_026891 | |nearest_promoter_id=NR_026891 | ||
|nearest_refseq=NM_017976 | |nearest_refseq=NM_017976 | ||
|nearest_unigene=Hs.511316 | |nearest_unigene=Hs.511316 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=50354921 | |start=50354921 | ||
|start_of_center_position=50354963 | |start_of_center_position=50354963 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000619314.1 | + | |transcript_name=ENST00000619314.1 ENST00000670332.1 ENST00000659570.1 BC014238 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_146610.1 | |tss_id=hg_146610.1 | ||
Revision as of 10:10, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 50354963 |
|---|---|
| End of the center position in the TSS region: | 50354964 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000619314.1 ENST00000670332.1 ENST00000659570.1 BC014238 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | ENST00000619314.1:0 ENST00000670332.1:0 ENST00000659570.1:0 BC014238:0 BC004103:13 LF349296:20 MA584873:20 LF349297:140 MA584874:140 ENST00000560359.1:322 ENST00000668321.1:454 ENST00000667317.1:459 ENST00000499624.3:461 BX537481:461 ENST00000648591.1:470 |
TATA-Box annotation
| Distance to TSS: | -85 |
|---|---|
| Nearest PromoterID: | NR_026891 |
| Entrez ID: | 55056 |
| Nearest Unigene: | Hs.511316 |
| Nearest Refseq: | NM_017976 |
| Nearest Ensembl: | ENSG00000285410 |
| Gene Name: | GABPB1 antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | GABPB1 intronic transcript |
| Gene Type: | ncRNA |
| CpG%: | 0.08 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
