Difference between revisions of "TSS:Hg 100664.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.07 |distance_to_tss=93 |entrez_id=26206 |gc_percent=0.626866 |gene_alias=BS-84|CILD28|CT142|HSD-1|SMP1|SPAG3|hSMP-1 |gene_description=sperm associat...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CILD28= | ||
| + | |CT142= | ||
| + | |HSD-1= | ||
| + | |SMP1= | ||
| + | |SPAG3= | ||
| + | |all_trans=ENST00000463889.5:0 ENST00000484764.5:0 ENST00000396638.6:0 ENST00000497810.1:0 ENST00000495667.5:0 ENST00000472605.1:0 ENST00000471631.1:0 uc064sze.1:0 uc064szi.1:0 uc003zyg.4:0 uc064szj.1:0 uc064szl.1:0 uc064szm.1:0 uc064szn.1:0 BC019247:0 DQ890798:0 EU176503:0 AK302313:0 ENST00000475644.5:-68 NM_172312:-68 NM_001039592:-68 uc064szf.1:-68 S83157:-68 U12978:-68 ENST00000340291.6:-78 uc003zye.4:-78 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| + | |distance=0 | ||
|distance_to_tss=93 | |distance_to_tss=93 | ||
| + | |end=35812194 | ||
|entrez_id=26206 | |entrez_id=26206 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
|gene_alias=BS-84|CILD28|CT142|HSD-1|SMP1|SPAG3|hSMP-1 | |gene_alias=BS-84|CILD28|CT142|HSD-1|SMP1|SPAG3|hSMP-1 | ||
|gene_description=sperm associated antigen 8 | |gene_description=sperm associated antigen 8 | ||
| − | |gene_name=SPAG8 | + | |gene_id=26206 |
| + | |gene_name=sperm associated antigen 8 | ||
| + | |gene_source=HGNC:14105 | ||
| + | |gene_symbol=SPAG8 | ||
| + | |gene_synonyms=BS-84 CT142 HSD-1 SPAG3 hSMP-1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hSMP-1= | ||
| + | |hgnc_mgi_id=HGNC:14105 | ||
|nearest_ensembl=ENSG00000137098 | |nearest_ensembl=ENSG00000137098 | ||
|nearest_promoter_id=NM_001039592 | |nearest_promoter_id=NM_001039592 | ||
|nearest_refseq=NM_012436 | |nearest_refseq=NM_012436 | ||
|nearest_unigene=Hs.256747 | |nearest_unigene=Hs.256747 | ||
| + | |num_trans=26 | ||
| + | |species=human | ||
| + | |start=35812143 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000463889.5 ENST00000484764.5 ENST00000396638.6 ENST00000497810.1 ENST00000495667.5 ENST00000472605.1 ENST00000471631.1 uc064sze.1 uc064szi.1 uc003zyg.4 uc064szj.1 uc064szl.1 uc064szm.1 uc064szn.1 BC019247 DQ890798 EU176503 AK302313 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100664.1 | |tss_id=hg_100664.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=C9JAA8 F2Z302 F8WBP3 H7C4J6 Q99932 | ||
}} | }} | ||
Revision as of 17:14, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000463889.5 ENST00000484764.5 ENST00000396638.6 ENST00000497810.1 ENST00000495667.5 ENST00000472605.1 ENST00000471631.1 uc064sze.1 uc064szi.1 uc003zyg.4 uc064szj.1 uc064szl.1 uc064szm.1 uc064szn.1 BC019247 DQ890798 EU176503 AK302313 |
|---|---|
| Distance: | 0 |
| Num_trans: | 26 |
| All_trans: | ENST00000463889.5:0 ENST00000484764.5:0 ENST00000396638.6:0 ENST00000497810.1:0 ENST00000495667.5:0 ENST00000472605.1:0 ENST00000471631.1:0 uc064sze.1:0 uc064szi.1:0 uc003zyg.4:0 uc064szj.1:0 uc064szl.1:0 uc064szm.1:0 uc064szn.1:0 BC019247:0 DQ890798:0 EU176503:0 AK302313:0 ENST00000475644.5:-68 NM_172312:-68 NM_001039592:-68 uc064szf.1:-68 S83157:-68 U12978:-68 ENST00000340291.6:-78 uc003zye.4:-78 |
TATA-Box annotation
| Distance to TSS: | 93 |
|---|---|
| Nearest PromoterID: | NM_001039592 |
| Entrez ID: | 26206 |
| Nearest Unigene: | Hs.256747 |
| Nearest Refseq: | NM_012436 |
| Nearest Ensembl: | ENSG00000137098 |
| Gene Name: | sperm associated antigen 8 |
| Gene Alias: | BS-84 |
| Gene Description: | sperm associated antigen 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
