Difference between revisions of "TSS:Hg 100669.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.055 |distance_to_tss=15 |entrez_id=392307 |gc_percent=0.626866 |gene_alias=C9orf128 |gene_description=family with sequence similarity 221 member B |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000423537.6:0 ENST00000472182.1:0 uc010mlc.3:0 uc064szx.1:0 BC146808:0 ENST00000388950.8:-10 NR_052026:-10 NM_001012446:-10 uc003zyj.3:-10 BX648702:-10 ENST00000377984.2:148 uc064szw.1:148 BC144503:148 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| + | |distance=0 | ||
|distance_to_tss=15 | |distance_to_tss=15 | ||
| + | |end=35828737 | ||
|entrez_id=392307 | |entrez_id=392307 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
|gene_alias=C9orf128 | |gene_alias=C9orf128 | ||
|gene_description=family with sequence similarity 221 member B | |gene_description=family with sequence similarity 221 member B | ||
| − | |gene_name=FAM221B | + | |gene_id=392307 |
| + | |gene_name=family with sequence similarity 221 member B | ||
| + | |gene_source=HGNC:30762 | ||
| + | |gene_symbol=FAM221B | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:30762 | ||
|nearest_ensembl=ENSG00000204930 | |nearest_ensembl=ENSG00000204930 | ||
|nearest_promoter_id=NR_052026 | |nearest_promoter_id=NR_052026 | ||
|nearest_refseq=NM_001012446 | |nearest_refseq=NM_001012446 | ||
|nearest_unigene=Hs.128075 | |nearest_unigene=Hs.128075 | ||
| + | |num_trans=13 | ||
| + | |species=human | ||
| + | |start=35828726 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000423537.6 ENST00000472182.1 uc010mlc.3 uc064szx.1 BC146808 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100669.1 | |tss_id=hg_100669.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A6H8Z2 C9JPK8 | ||
}} | }} | ||
Revision as of 17:14, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000423537.6 ENST00000472182.1 uc010mlc.3 uc064szx.1 BC146808 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENST00000423537.6:0 ENST00000472182.1:0 uc010mlc.3:0 uc064szx.1:0 BC146808:0 ENST00000388950.8:-10 NR_052026:-10 NM_001012446:-10 uc003zyj.3:-10 BX648702:-10 ENST00000377984.2:148 uc064szw.1:148 BC144503:148 |
TATA-Box annotation
| Distance to TSS: | 15 |
|---|---|
| Nearest PromoterID: | NR_052026 |
| Entrez ID: | 392307 |
| Nearest Unigene: | Hs.128075 |
| Nearest Refseq: | NM_001012446 |
| Nearest Ensembl: | ENSG00000204930 |
| Gene Name: | family with sequence similarity 221 member B |
| Gene Alias: | C9orf128 |
| Gene Description: | family with sequence similarity 221 member B |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
