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Difference between revisions of "TSS:Hg 236365.1"

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(Created page with "{{TSSDetail |all_trans=ENST00000565807.6:0 ENST00000562488.5:0 ENST00000569639.5:0 ENST00000564499.5:0 ENST00000357763.8:0 ENST00000613898.1:0 ENST00000566821.1:0 ENST00000562...")
 
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{{TSSDetail
 
{{TSSDetail
 +
|HP2ALPHA2=
 +
|HPA1S=
 
|all_trans=ENST00000565807.6:0 ENST00000562488.5:0 ENST00000569639.5:0 ENST00000564499.5:0 ENST00000357763.8:0 ENST00000613898.1:0 ENST00000566821.1:0 ENST00000562526.5:0 ENST00000565574.5:0 uc059wxz.1:0 uc059wya.1:0 uc059wyb.1:0 uc059wyc.1:0 uc059wyd.1:0 uc059wye.1:0 uc059wyf.1:0 uc059wyg.1:0 uc002fbt.7:0 AK314700:0 BC107587:0 BC058031:0 BC070299:0 AK055872:0 BC017862:0 K01763:0 L29394:0 BC121124:0 BC121125:0 ENST00000568417.6:2 uc059wyh.1:2 X00637:3 K00422:5 ENST00000228226.12:-11 ENST00000398131.6:-11 uc059wxx.1:-11 uc059wxy.1:-11 ENST00000355906.9:-25 uc002fbr.5:-25 ENST00000570083.5:-28 NM_001126102:-28 NM_001318138:-28 NM_005143:-28 uc010cgm.4:-28
 
|all_trans=ENST00000565807.6:0 ENST00000562488.5:0 ENST00000569639.5:0 ENST00000564499.5:0 ENST00000357763.8:0 ENST00000613898.1:0 ENST00000566821.1:0 ENST00000562526.5:0 ENST00000565574.5:0 uc059wxz.1:0 uc059wya.1:0 uc059wyb.1:0 uc059wyc.1:0 uc059wyd.1:0 uc059wye.1:0 uc059wyf.1:0 uc059wyg.1:0 uc002fbt.7:0 AK314700:0 BC107587:0 BC058031:0 BC070299:0 AK055872:0 BC017862:0 K01763:0 L29394:0 BC121124:0 BC121125:0 ENST00000568417.6:2 uc059wyh.1:2 X00637:3 K00422:5 ENST00000228226.12:-11 ENST00000398131.6:-11 uc059wxx.1:-11 uc059wxy.1:-11 ENST00000355906.9:-25 uc002fbr.5:-25 ENST00000570083.5:-28 NM_001126102:-28 NM_001318138:-28 NM_005143:-28 uc010cgm.4:-28
 
|chr=chr16
 
|chr=chr16
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|distance_to_tss=36
 
|distance_to_tss=36
 
|end=72054636
 
|end=72054636
 +
|end_of_center_position=10652530
 
|entrez_id=3240
 
|entrez_id=3240
 
|gc_percent=0.492537
 
|gc_percent=0.492537
−
|gene_alias=BP|HP2ALPHA2|HPA1S
+
|gene_alias=BP
 
|gene_description=haptoglobin
 
|gene_description=haptoglobin
 
|gene_id=3240
 
|gene_id=3240
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|species=human
 
|species=human
 
|start=72054619
 
|start=72054619
 +
|start_of_center_position=10652529
 
|strand=+
 
|strand=+
 
|tata_box="-37(CAGCATAAAAAG,-,0.00),-35(GCATAAAAAGAC,+,0.00)"
 
|tata_box="-37(CAGCATAAAAAG,-,0.00),-35(GCATAAAAAGAC,+,0.00)"

Revision as of 00:10, 15 May 2019

Basic information about the TSS

TSS ID:hg_236365.1
Species:human
Chr:chr16
TSS Classification:no
Start:72054619
End:72054636
Strand:+
TSS Score:1
Start of the center position in the TSS region:10652529
End of the center position in the TSS region:10652530



Gene and protein annotation

Transcript_name:ENST00000565807.6 ENST00000562488.5 ENST00000569639.5 ENST00000564499.5 ENST00000357763.8 ENST00000613898.1 ENST00000566821.1 ENST00000562526.5 ENST00000565574.5 uc059wxz.1 uc059wya.1 uc059wyb.1 uc059wyc.1 uc059wyd.1 uc059wye.1 uc059wyf.1 uc059wyg.1 uc002fbt.7 AK314700 BC107587 BC058031 BC070299 AK055872 BC017862 K01763 L29394 BC121124 BC121125
Distance:0
GeneID:3240
HGNC/MGI_ID:HGNC:5141
UniProt_ID:A0A087WU08 A0A0C4DGL8 B3KP77 H0Y300 H3BMJ7 H3BS21 J3QQI8 P00738 Q6NSB4
Gene_name:haptoglobin
Gene_symbol:HP
Gene_synonyms:
Gene_source:HGNC:5141



Transcript annotation

Transcript_name:ENST00000565807.6 ENST00000562488.5 ENST00000569639.5 ENST00000564499.5 ENST00000357763.8 ENST00000613898.1 ENST00000566821.1 ENST00000562526.5 ENST00000565574.5 uc059wxz.1 uc059wya.1 uc059wyb.1 uc059wyc.1 uc059wyd.1 uc059wye.1 uc059wyf.1 uc059wyg.1 uc002fbt.7 AK314700 BC107587 BC058031 BC070299 AK055872 BC017862 K01763 L29394 BC121124 BC121125
Distance:0
Num_trans:43
All_trans:ENST00000565807.6:0 ENST00000562488.5:0 ENST00000569639.5:0 ENST00000564499.5:0 ENST00000357763.8:0 ENST00000613898.1:0 ENST00000566821.1:0 ENST00000562526.5:0 ENST00000565574.5:0 uc059wxz.1:0 uc059wya.1:0 uc059wyb.1:0 uc059wyc.1:0 uc059wyd.1:0 uc059wye.1:0 uc059wyf.1:0 uc059wyg.1:0 uc002fbt.7:0 AK314700:0 BC107587:0 BC058031:0 BC070299:0 AK055872:0 BC017862:0 K01763:0 L29394:0 BC121124:0 BC121125:0 ENST00000568417.6:2 uc059wyh.1:2 X00637:3 K00422:5 ENST00000228226.12:-11 ENST00000398131.6:-11 uc059wxx.1:-11 uc059wxy.1:-11 ENST00000355906.9:-25 uc002fbr.5:-25 ENST00000570083.5:-28 NM_001126102:-28 NM_001318138:-28 NM_005143:-28 uc010cgm.4:-28



TATA-Box annotation

Distance to TSS:36
Nearest PromoterID:NM_005143
Entrez ID:3240
Nearest Unigene:Hs.513711
Nearest Refseq:NM_005143
Nearest Ensembl:ENSG00000257017
Gene Name:haptoglobin
Gene Alias:BP
Gene Description:haptoglobin
Gene Type:protein-coding
CpG%:0.01
GC%:0.492537
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):"-37(CAGCATAAAAAG,-,0.00),-35(GCATAAAAAGAC,+,0.00)"
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