Difference between revisions of "TSS:Mm 10088.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |AA409679= | ||
|all_trans=BC138175:-55 BC145171:-55 ENSMUST00000091505.10:-111 AK032237:-111 NM_001081161:-136 uc008idn.1:-136 uc008ido.1:-136 ENSMUST00000115099.8:-142 ENSMUST00000062934.6:143 AK077831:143 | |all_trans=BC138175:-55 BC145171:-55 ENSMUST00000091505.10:-111 AK032237:-111 NM_001081161:-136 uc008idn.1:-136 uc008ido.1:-136 ENSMUST00000115099.8:-142 ENSMUST00000062934.6:143 AK077831:143 | ||
|chr=chr2 | |chr=chr2 | ||
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|distance_to_tss=145 | |distance_to_tss=145 | ||
|end=3118542 | |end=3118542 | ||
| + | |end_of_center_position=3118533 | ||
|entrez_id=269233 | |entrez_id=269233 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
| − | |gene_alias=9630050M13Rik | + | |gene_alias=9630050M13Rik |
|gene_description="family with sequence similarity 171, member A1" | |gene_description="family with sequence similarity 171, member A1" | ||
|gene_id=269233 | |gene_id=269233 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=3118523 | |start=3118523 | ||
| + | |start_of_center_position=3118532 | ||
|strand=+ | |strand=+ | ||
|transcript_name=BC138175 BC145171 | |transcript_name=BC138175 BC145171 | ||
Revision as of 00:32, 15 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 3118532 |
|---|---|
| End of the center position in the TSS region: | 3118533 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC138175 BC145171 |
|---|---|
| Distance: | -55 |
| Num_trans: | 10 |
| All_trans: | BC138175:-55 BC145171:-55 ENSMUST00000091505.10:-111 AK032237:-111 NM_001081161:-136 uc008idn.1:-136 uc008ido.1:-136 ENSMUST00000115099.8:-142 ENSMUST00000062934.6:143 AK077831:143 |
TATA-Box annotation
| Distance to TSS: | 145 |
|---|---|
| Nearest PromoterID: | NM_001081161 |
| Entrez ID: | 269233 |
| Nearest Unigene: | Mm.23044 |
| Nearest Refseq: | NM_001081161 |
| Nearest Ensembl: | ENSMUSG00000050530 |
| Gene Name: | "family with sequence similarity 171, member A1" |
| Gene Alias: | 9630050M13Rik |
| Gene Description: | "family with sequence similarity 171, member A1" |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
