Difference between revisions of "TSS:Hg 169179.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000549253.5:67 NM_001278682:67 uc060mya.1:67 ENST00000551557.1:191 uc060myb.1:191 ENST00000405385.7:305 NM_173209:305 NM_173208:305 NM_001278684:3...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |TGIF= | ||
|all_trans=ENST00000549253.5:67 NM_001278682:67 uc060mya.1:67 ENST00000551557.1:191 uc060myb.1:191 ENST00000405385.7:305 NM_173209:305 NM_173208:305 NM_001278684:305 uc002klx.5:305 ENST00000343820.9:358 uc002kly.5:358 | |all_trans=ENST00000549253.5:67 NM_001278682:67 uc060mya.1:67 ENST00000551557.1:191 uc060myb.1:191 ENST00000405385.7:305 NM_173209:305 NM_173208:305 NM_001278684:305 uc002klx.5:305 ENST00000343820.9:358 uc002kly.5:358 | ||
|chr=chr18 | |chr=chr18 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=-74 | |distance_to_tss=-74 | ||
|end=3449346 | |end=3449346 | ||
| + | |end_of_center_position=3449340 | ||
|entrez_id=7050 | |entrez_id=7050 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias=HPE4 | + | |gene_alias=HPE4 |
|gene_description=TGFB induced factor homeobox 1 | |gene_description=TGFB induced factor homeobox 1 | ||
|gene_id=7050 | |gene_id=7050 | ||
| Line 24: | Line 26: | ||
|species=human | |species=human | ||
|start=3449332 | |start=3449332 | ||
| + | |start_of_center_position=3449339 | ||
|strand=+ | |strand=+ | ||
|tata_box="-31(AGCTATAAAAGT,-,0.00)" | |tata_box="-31(AGCTATAAAAGT,-,0.00)" | ||
Revision as of 08:58, 15 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3449339 |
|---|---|
| End of the center position in the TSS region: | 3449340 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000549253.5 NM_001278682 uc060mya.1 |
|---|---|
| Distance: | 67 |
| Num_trans: | 12 |
| All_trans: | ENST00000549253.5:67 NM_001278682:67 uc060mya.1:67 ENST00000551557.1:191 uc060myb.1:191 ENST00000405385.7:305 NM_173209:305 NM_173208:305 NM_001278684:305 uc002klx.5:305 ENST00000343820.9:358 uc002kly.5:358 |
TATA-Box annotation
| Distance to TSS: | -74 |
|---|---|
| Nearest PromoterID: | NM_001278682 |
| Entrez ID: | 7050 |
| Nearest Unigene: | Hs.373550 |
| Nearest Refseq: | NM_003244 |
| Nearest Ensembl: | ENSG00000177426 |
| Gene Name: | TGFB induced factor homeobox 1 |
| Gene Alias: | HPE4 |
| Gene Description: | TGFB induced factor homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-31(AGCTATAAAAGT,-,0.00)" |
