Difference between revisions of "TSS:Hg 100004.1"
From referenceTSS
| Line 7: | Line 7: | ||
|NFIB2= | |NFIB2= | ||
|NFIB3= | |NFIB3= | ||
| − | |all_trans=ENST00000397579.6 | + | |all_trans=LF355361:-42 MA590938:-42 ENST00000397579.6:62 ENST00000397581.6:125 LF355360:142 MA590937:142 NR_161382:-308 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=-42 |
| − | |distance_to_tss= | + | |distance_to_tss=309 |
|end=14314646 | |end=14314646 | ||
|end_of_center_position=14314645 | |end_of_center_position=14314645 | ||
|entrez_id=4781 | |entrez_id=4781 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| − | |gene_alias=CTF | + | |gene_alias=CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 |
|gene_description=nuclear factor I B | |gene_description=nuclear factor I B | ||
|gene_id=4781 | |gene_id=4781 | ||
| − | |gene_name= | + | |gene_name=NFIB |
|gene_source=HGNC:7785 | |gene_source=HGNC:7785 | ||
|gene_symbol=NFIB | |gene_symbol=NFIB | ||
| Line 26: | Line 26: | ||
|hgnc_mgi_id=HGNC:7785 | |hgnc_mgi_id=HGNC:7785 | ||
|nearest_ensembl=ENSG00000147862 | |nearest_ensembl=ENSG00000147862 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_161382 |
|nearest_refseq=NM_005596 | |nearest_refseq=NM_005596 | ||
|nearest_unigene=Hs.644095 | |nearest_unigene=Hs.644095 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=14314643 | |start=14314643 | ||
|start_of_center_position=14314644 | |start_of_center_position=14314644 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF355361 MA590938 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100004.1 | |tss_id=hg_100004.1 | ||
Revision as of 17:27, 11 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 14314644 |
|---|---|
| End of the center position in the TSS region: | 14314645 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF355361 MA590938 |
|---|---|
| Distance: | -42 |
| Num_trans: | 7 |
| All_trans: | LF355361:-42 MA590938:-42 ENST00000397579.6:62 ENST00000397581.6:125 LF355360:142 MA590937:142 NR_161382:-308 |
TATA-Box annotation
| Distance to TSS: | 309 |
|---|---|
| Nearest PromoterID: | NR_161382 |
| Entrez ID: | 4781 |
| Nearest Unigene: | Hs.644095 |
| Nearest Refseq: | NM_005596 |
| Nearest Ensembl: | ENSG00000147862 |
| Gene Name: | NFIB |
| Gene Alias: | CTF |
| Gene Description: | nuclear factor I B |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
