Difference between revisions of "TSS:Hg 100062.1"
From referenceTSS
| Line 6: | Line 6: | ||
|TILRR= | |TILRR= | ||
|TRIGNO2= | |TRIGNO2= | ||
| − | |all_trans=ENST00000397561.3:350 | + | |all_trans=LF207464:313 MA443041:313 LF366486:313 MA602063:313 ENST00000397561.3:350 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=313 |
|distance_to_tss=-11690 | |distance_to_tss=-11690 | ||
|end=14922686 | |end=14922686 | ||
| Line 15: | Line 15: | ||
|entrez_id=158326 | |entrez_id=158326 | ||
|gc_percent=0.38806 | |gc_percent=0.38806 | ||
| − | |gene_alias=BNAR | + | |gene_alias=BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 |
|gene_description=FRAS1 related extracellular matrix 1 | |gene_description=FRAS1 related extracellular matrix 1 | ||
|gene_id= | |gene_id= | ||
| − | |gene_name= | + | |gene_name=FREM1 |
|gene_source=HGNC:6539 | |gene_source=HGNC:6539 | ||
|gene_symbol=LDHAP4 | |gene_symbol=LDHAP4 | ||
| Line 25: | Line 25: | ||
|hgnc_mgi_id=HGNC:6539 | |hgnc_mgi_id=HGNC:6539 | ||
|nearest_ensembl=ENSG00000164946 | |nearest_ensembl=ENSG00000164946 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_163238 |
|nearest_refseq=NM_144966 | |nearest_refseq=NM_144966 | ||
|nearest_unigene=Hs.50850 | |nearest_unigene=Hs.50850 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=14922683 | |start=14922683 | ||
|start_of_center_position=14922684 | |start_of_center_position=14922684 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF207464 MA443041 LF366486 MA602063 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100062.1 | |tss_id=hg_100062.1 | ||
Revision as of 17:29, 11 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 14922684 |
|---|---|
| End of the center position in the TSS region: | 14922685 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF207464 MA443041 LF366486 MA602063 |
|---|---|
| Distance: | 313 |
| Num_trans: | 5 |
| All_trans: | LF207464:313 MA443041:313 LF366486:313 MA602063:313 ENST00000397561.3:350 |
TATA-Box annotation
| Distance to TSS: | -11690 |
|---|---|
| Nearest PromoterID: | NR_163238 |
| Entrez ID: | 158326 |
| Nearest Unigene: | Hs.50850 |
| Nearest Refseq: | NM_144966 |
| Nearest Ensembl: | ENSG00000164946 |
| Gene Name: | FREM1 |
| Gene Alias: | BNAR |
| Gene Description: | FRAS1 related extracellular matrix 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
