Difference between revisions of "TSS:Hg 100097.1"
From referenceTSS
| Line 2: | Line 2: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=-201062 | |distance_to_tss=-201062 | ||
|end=16477377 | |end=16477377 | ||
| Line 13: | Line 13: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000205549 | |nearest_ensembl=ENSG00000205549 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001364979 |
|nearest_refseq=NM_001271829 | |nearest_refseq=NM_001271829 | ||
|nearest_unigene=Hs.586441 | |nearest_unigene=Hs.586441 | ||
| Line 21: | Line 21: | ||
|start_of_center_position=16477374 | |start_of_center_position=16477374 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=33(TTCTTTAAAAGC,-,0.00),34(TCTTTAAAAGCC,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 17:29, 11 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 16477374 |
|---|---|
| End of the center position in the TSS region: | 16477375 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -201062 |
|---|---|
| Nearest PromoterID: | NM_001364979 |
| Entrez ID: | 100129385 |
| Nearest Unigene: | Hs.586441 |
| Nearest Refseq: | NM_001271829 |
| Nearest Ensembl: | ENSG00000205549 |
| Gene Name: | C9orf92 |
| Gene Alias: | Em:AL513424.1 |
| Gene Description: | chromosome 9 open reading frame 92 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.308458 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 33(TTCTTTAAAAGC,-,0.00),34(TCTTTAAAAGCC,+,0.00) |
