Difference between revisions of "TSS:Hg 100119.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AY438376:-15 ENST00000418777.5:-101 ENST00000468187.6 | + | |all_trans=AY438376:-15 LF355575:-87 MA591152:-87 ENST00000418777.5:-101 ENST00000468187.6:-101 ENST00000603713.5:-269 DQ884944:-269 ENST00000603313.5:-318 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=-15 | |distance=-15 | ||
| − | |distance_to_tss= | + | |distance_to_tss=1075 |
|end=16727896 | |end=16727896 | ||
|end_of_center_position=16727890 | |end_of_center_position=16727890 | ||
| − | |entrez_id= | + | |entrez_id=111216284 |
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=BNC2 antisense RNA 1 |
|gene_id=54796 | |gene_id=54796 | ||
|gene_name=basonuclin 2 | |gene_name=basonuclin 2 | ||
| Line 16: | Line 16: | ||
|gene_symbol=BNC2 | |gene_symbol=BNC2 | ||
|gene_synonyms=BSN2 FLJ20043 | |gene_synonyms=BSN2 FLJ20043 | ||
| − | |gene_type= | + | |gene_type=ncRNA |
|hgnc_mgi_id=HGNC:30988 | |hgnc_mgi_id=HGNC:30988 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000234779 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_151723 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_151723 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.609218 |
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=16727882 | |start=16727882 | ||
|start_of_center_position=16727889 | |start_of_center_position=16727889 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(GACTTTAAGAGA,-,0.00),-33(ACTTTAAGAGAC,+,0.00) |
|transcript_name=AY438376 | |transcript_name=AY438376 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 17:30, 11 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 16727889 |
|---|---|
| End of the center position in the TSS region: | 16727890 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AY438376 |
|---|---|
| Distance: | -15 |
| Num_trans: | 8 |
| All_trans: | AY438376:-15 LF355575:-87 MA591152:-87 ENST00000418777.5:-101 ENST00000468187.6:-101 ENST00000603713.5:-269 DQ884944:-269 ENST00000603313.5:-318 |
TATA-Box annotation
| Distance to TSS: | 1075 |
|---|---|
| Nearest PromoterID: | NR_151723 |
| Entrez ID: | 111216284 |
| Nearest Unigene: | Hs.609218 |
| Nearest Refseq: | NR_151723 |
| Nearest Ensembl: | ENSG00000234779 |
| Gene Name: | basonuclin 2 |
| Gene Alias: | - |
| Gene Description: | BNC2 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(GACTTTAAGAGA,-,0.00),-33(ACTTTAAGAGAC,+,0.00) |
