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Difference between revisions of "TSS:Hg 100151.1"

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Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
 
|FAM29A=
 
|FAM29A=
|all_trans=ENST00000380502.7:0 uc003znk.5:0 AF533709:0 NM_001270890:147 NM_017645:147 AF537091:185 AK056458:185 AL832495:188 BC026178:188 BC113981:350 BC114492:350 AB527315:438 AM393468:438
+
|all_trans=AF533709:0 ENST00000380502.8:185 NM_001270890:185 NM_017645:185 AF537091:185 AK056458:185 AL832495:188 BC026178:188 BC113981:350 BC114492:350 AB527315:438 AM393468:438
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.06
 
|cpg_percent=0.06
 
|distance=0
 
|distance=0
|distance_to_tss=-162
+
|distance_to_tss=-200
 
|end=19103120
 
|end=19103120
 
|end_of_center_position=19103105
 
|end_of_center_position=19103105
 
|entrez_id=54801
 
|entrez_id=54801
 
|gc_percent=0.547264
 
|gc_percent=0.547264
|gene_alias=Dgt6
+
|gene_alias=Dgt6|FAM29A
 
|gene_description=HAUS augmin like complex subunit 6
 
|gene_description=HAUS augmin like complex subunit 6
 
|gene_id=54801
 
|gene_id=54801
Line 20: Line 20:
 
|hgnc_mgi_id=HGNC:25948
 
|hgnc_mgi_id=HGNC:25948
 
|nearest_ensembl=ENSG00000147874
 
|nearest_ensembl=ENSG00000147874
|nearest_promoter_id=NM_001270890
+
|nearest_promoter_id=NM_017645
 
|nearest_refseq=NM_017645
 
|nearest_refseq=NM_017645
 
|nearest_unigene=Hs.533468
 
|nearest_unigene=Hs.533468
|num_trans=13
+
|num_trans=12
 
|species=human
 
|species=human
 
|start=19103088
 
|start=19103088
 
|start_of_center_position=19103104
 
|start_of_center_position=19103104
 
|strand=-
 
|strand=-
|tata_box="-84(CCATTTATGGCT,+,0.00)"
+
|tata_box=-84(CCATTTATGGCT,+,0.00)
|transcript_name=ENST00000380502.7 uc003znk.5 AF533709
+
|transcript_name=AF533709
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_100151.1
 
|tss_id=hg_100151.1
 
|tss_score=1
 
|tss_score=1
|uniprot_id=Q7Z4H7
+
|uniprot_id=
 
}}
 
}}

Revision as of 17:31, 11 June 2021

Basic information about the TSS


TSS ID:hg_100151.1
Species:human
Chr:chr9
TSS Classification:yes
Start:19103088
End:19103120
Strand:-
TSS Score:1
Start of the center position in the TSS region:19103104
End of the center position in the TSS region:19103105



Gene and protein annotation


Transcript_name:AF533709
Distance:0
GeneID:54801
HGNC/MGI_ID:HGNC:25948
UniProt_ID:
Gene_name:HAUS augmin like complex subunit 6
Gene_symbol:HAUS6
Gene_synonyms:FLJ20060 KIAA1574 dgt6
Gene_source:HGNC:25948



Transcript annotation


Transcript_name:AF533709
Distance:0
Num_trans:12
All_trans:AF533709:0 ENST00000380502.8:185 NM_001270890:185 NM_017645:185 AF537091:185 AK056458:185 AL832495:188 BC026178:188 BC113981:350 BC114492:350 AB527315:438 AM393468:438



TATA-Box annotation


Distance to TSS:-200
Nearest PromoterID:NM_017645
Entrez ID:54801
Nearest Unigene:Hs.533468
Nearest Refseq:NM_017645
Nearest Ensembl:ENSG00000147874
Gene Name:HAUS augmin like complex subunit 6
Gene Alias:Dgt6
Gene Description:HAUS augmin like complex subunit 6
Gene Type:protein-coding
CpG%:0.06
GC%:0.547264
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):-84(CCATTTATGGCT,+,0.00)