Difference between revisions of "TSS:Hg 100180.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=DQ067463:221 DQ067462:420 | + | |all_trans=NM_001193288:0 NM_020344:0 NM_001375851:0 NM_001375850:0 DQ067463:221 DQ067462:420 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=-2022 | |distance_to_tss=-2022 | ||
|end=19789052 | |end=19789052 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:10976 | |hgnc_mgi_id=HGNC:10976 | ||
|nearest_ensembl=ENSG00000155886 | |nearest_ensembl=ENSG00000155886 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_020344 |
|nearest_refseq=NM_020344 | |nearest_refseq=NM_020344 | ||
|nearest_unigene=Hs.283014 | |nearest_unigene=Hs.283014 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=19789030 | |start=19789030 | ||
|start_of_center_position=19789041 | |start_of_center_position=19789041 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001193288 NM_020344 NM_001375851 NM_001375850 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100180.1 | |tss_id=hg_100180.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q9UI40 |
}} | }} | ||
Revision as of 14:19, 14 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 19789041 |
|---|---|
| End of the center position in the TSS region: | 19789042 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_001193288 NM_020344 NM_001375851 NM_001375850 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | NM_001193288:0 NM_020344:0 NM_001375851:0 NM_001375850:0 DQ067463:221 DQ067462:420 |
TATA-Box annotation
| Distance to TSS: | -2022 |
|---|---|
| Nearest PromoterID: | NM_020344 |
| Entrez ID: | 25769 |
| Nearest Unigene: | Hs.283014 |
| Nearest Refseq: | NM_020344 |
| Nearest Ensembl: | ENSG00000155886 |
| Gene Name: | solute carrier family 24 member 2 |
| Gene Alias: | NCKX2 |
| Gene Description: | solute carrier family 24 member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
