Difference between revisions of "TSS:Hg 100264.1"
From referenceTSS
| Line 17: | Line 17: | ||
|P19ARF= | |P19ARF= | ||
|TP16= | |TP16= | ||
| − | |all_trans= | + | |all_trans=KC806059:91 U38945:91 S78535:110 AB464504:128 ENST00000530628.2:171 ENST00000579755.2:190 NM_058195:190 BC015960:201 BC021998:201 U26727:224 BT007020:251 AJ844636:262 ENST00000470819.2:-278 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| − | |distance= | + | |distance=91 |
|distance_to_tss=-97 | |distance_to_tss=-97 | ||
|end=21994595 | |end=21994595 | ||
| Line 26: | Line 26: | ||
|entrez_id=1029 | |entrez_id=1029 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
| − | |gene_alias=ARF | + | |gene_alias=ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16 |
|gene_description=cyclin dependent kinase inhibitor 2A | |gene_description=cyclin dependent kinase inhibitor 2A | ||
|gene_id=1029 | |gene_id=1029 | ||
| − | |gene_name=cyclin | + | |gene_name=cyclin dependent kinase inhibitor 2A |
|gene_source=HGNC:1787 | |gene_source=HGNC:1787 | ||
|gene_symbol=CDKN2A | |gene_symbol=CDKN2A | ||
| Line 39: | Line 39: | ||
|nearest_refseq=NM_000077 | |nearest_refseq=NM_000077 | ||
|nearest_unigene=Hs.512599 | |nearest_unigene=Hs.512599 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=21994581 | |start=21994581 | ||
|start_of_center_position=21994588 | |start_of_center_position=21994588 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=KC806059 U38945 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100264.1 | |tss_id=hg_100264.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 14:21, 14 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 21994588 |
|---|---|
| End of the center position in the TSS region: | 21994589 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | KC806059 U38945 |
|---|---|
| Distance: | 91 |
| Num_trans: | 13 |
| All_trans: | KC806059:91 U38945:91 S78535:110 AB464504:128 ENST00000530628.2:171 ENST00000579755.2:190 NM_058195:190 BC015960:201 BC021998:201 U26727:224 BT007020:251 AJ844636:262 ENST00000470819.2:-278 |
TATA-Box annotation
| Distance to TSS: | -97 |
|---|---|
| Nearest PromoterID: | NM_058195 |
| Entrez ID: | 1029 |
| Nearest Unigene: | Hs.512599 |
| Nearest Refseq: | NM_000077 |
| Nearest Ensembl: | ENSG00000147889 |
| Gene Name: | cyclin dependent kinase inhibitor 2A |
| Gene Alias: | ARF |
| Gene Description: | cyclin dependent kinase inhibitor 2A |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
