Difference between revisions of "TSS:Hg 100290.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HELN1= | |HELN1= | ||
|HUB= | |HUB= | ||
| + | |all_trans=LF355708:-294 MA591285:-294 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-294 |
| − | |distance_to_tss= | + | |distance_to_tss=34529 |
|end=23786781 | |end=23786781 | ||
|end_of_center_position=23786781 | |end_of_center_position=23786781 | ||
|entrez_id=1993 | |entrez_id=1993 | ||
|gc_percent=0.348259 | |gc_percent=0.348259 | ||
| − | |gene_alias=HEL-N1 | + | |gene_alias=HEL-N1|HELN1|HUB |
|gene_description=ELAV like RNA binding protein 2 | |gene_description=ELAV like RNA binding protein 2 | ||
|gene_name=ELAVL2 | |gene_name=ELAVL2 | ||
| Line 18: | Line 19: | ||
|nearest_refseq=NM_004432 | |nearest_refseq=NM_004432 | ||
|nearest_unigene=Hs.166109 | |nearest_unigene=Hs.166109 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=23786779 | |start=23786779 | ||
|start_of_center_position=23786780 | |start_of_center_position=23786780 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-55(ATTTTTAAAAGG,-,0.00),-54(TTTTTAAAAGGC,+,0.00),38(GCTTATATACTT,+,0.00) |
| − | |transcript_name= | + | |transcript_name=LF355708 MA591285 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100290.1 | |tss_id=hg_100290.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Revision as of 14:21, 14 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 23786780 |
|---|---|
| End of the center position in the TSS region: | 23786781 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF355708 MA591285 |
|---|---|
| Distance: | -294 |
| Num_trans: | 2 |
| All_trans: | LF355708:-294 MA591285:-294 |
TATA-Box annotation
| Distance to TSS: | 34529 |
|---|---|
| Nearest PromoterID: | NM_001171197 |
| Entrez ID: | 1993 |
| Nearest Unigene: | Hs.166109 |
| Nearest Refseq: | NM_004432 |
| Nearest Ensembl: | ENSG00000107105 |
| Gene Name: | ELAVL2 |
| Gene Alias: | HEL-N1 |
| Gene Description: | ELAV like RNA binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.348259 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -55(ATTTTTAAAAGG,-,0.00),-54(TTTTTAAAAGGC,+,0.00),38(GCTTATATACTT,+,0.00) |
