Difference between revisions of "TSS:Hg 100291.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HELN1= | |HELN1= | ||
|HUB= | |HUB= | ||
| + | |all_trans=LF355718:237 MA591295:237 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=237 |
| − | |distance_to_tss= | + | |distance_to_tss=4993 |
|end=23816317 | |end=23816317 | ||
|end_of_center_position=23816317 | |end_of_center_position=23816317 | ||
|entrez_id=1993 | |entrez_id=1993 | ||
|gc_percent=0.263682 | |gc_percent=0.263682 | ||
| − | |gene_alias=HEL-N1 | + | |gene_alias=HEL-N1|HELN1|HUB |
|gene_description=ELAV like RNA binding protein 2 | |gene_description=ELAV like RNA binding protein 2 | ||
|gene_name=ELAVL2 | |gene_name=ELAVL2 | ||
| Line 18: | Line 19: | ||
|nearest_refseq=NM_004432 | |nearest_refseq=NM_004432 | ||
|nearest_unigene=Hs.166109 | |nearest_unigene=Hs.166109 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=23816315 | |start=23816315 | ||
|start_of_center_position=23816316 | |start_of_center_position=23816316 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=39(CTCTTTATGGGA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=LF355718 MA591295 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100291.1 | |tss_id=hg_100291.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Revision as of 14:21, 14 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 23816316 |
|---|---|
| End of the center position in the TSS region: | 23816317 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF355718 MA591295 |
|---|---|
| Distance: | 237 |
| Num_trans: | 2 |
| All_trans: | LF355718:237 MA591295:237 |
TATA-Box annotation
| Distance to TSS: | 4993 |
|---|---|
| Nearest PromoterID: | NM_001171197 |
| Entrez ID: | 1993 |
| Nearest Unigene: | Hs.166109 |
| Nearest Refseq: | NM_004432 |
| Nearest Ensembl: | ENSG00000107105 |
| Gene Name: | ELAVL2 |
| Gene Alias: | HEL-N1 |
| Gene Description: | ELAV like RNA binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.263682 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 39(CTCTTTATGGGA,+,0.00) |
