Difference between revisions of "TSS:Hg 100298.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HELN1= | |HELN1= | ||
|HUB= | |HUB= | ||
| − | |all_trans=U12431:-57 U29943:-57 ENST00000462649 | + | |all_trans=ENST00000397312.7:0 NM_001351455:0 NM_001351472:0 NM_004432:0 NM_001351468:0 NM_001351467:0 NM_001351464:0 NM_001351463:0 NM_001351477:0 NM_001351457:0 NM_001351461:0 U12431:-57 U29943:-57 ENST00000462649.1:58 ENST00000380117.5:-91 LF385423:167 MA621000:167 AB209294:167 LF355725:379 MA591302:379 LF355724:461 MA591301:461 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=1 |
|end=23826246 | |end=23826246 | ||
|end_of_center_position=23826239 | |end_of_center_position=23826239 | ||
|entrez_id=1993 | |entrez_id=1993 | ||
|gc_percent=0.507463 | |gc_percent=0.507463 | ||
| − | |gene_alias=HEL-N1 | + | |gene_alias=HEL-N1|HELN1|HUB |
|gene_description=ELAV like RNA binding protein 2 | |gene_description=ELAV like RNA binding protein 2 | ||
| − | |gene_name=ELAVL2 | + | |gene_id=1993 |
| + | |gene_name=ELAV like RNA binding protein 2 | ||
| + | |gene_source=HGNC:3313 | ||
| + | |gene_symbol=ELAVL2 | ||
| + | |gene_synonyms=HEL-N1 HuB | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:3313 | ||
|nearest_ensembl=ENSG00000107105 | |nearest_ensembl=ENSG00000107105 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001351467 |
|nearest_refseq=NM_004432 | |nearest_refseq=NM_004432 | ||
|nearest_unigene=Hs.166109 | |nearest_unigene=Hs.166109 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=23826231 | |start=23826231 | ||
|start_of_center_position=23826238 | |start_of_center_position=23826238 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-7(CCTTTTAAGACG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000397312.7 NM_001351455 NM_001351472 NM_004432 NM_001351468 NM_001351467 NM_001351464 NM_001351463 NM_001351477 NM_001351457 NM_001351461 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100298.1 | |tss_id=hg_100298.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q12926 | ||
}} | }} | ||
Revision as of 14:22, 14 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 23826238 |
|---|---|
| End of the center position in the TSS region: | 23826239 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000397312.7 NM_001351455 NM_001351472 NM_004432 NM_001351468 NM_001351467 NM_001351464 NM_001351463 NM_001351477 NM_001351457 NM_001351461 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENST00000397312.7:0 NM_001351455:0 NM_001351472:0 NM_004432:0 NM_001351468:0 NM_001351467:0 NM_001351464:0 NM_001351463:0 NM_001351477:0 NM_001351457:0 NM_001351461:0 U12431:-57 U29943:-57 ENST00000462649.1:58 ENST00000380117.5:-91 LF385423:167 MA621000:167 AB209294:167 LF355725:379 MA591302:379 LF355724:461 MA591301:461 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_001351467 |
| Entrez ID: | 1993 |
| Nearest Unigene: | Hs.166109 |
| Nearest Refseq: | NM_004432 |
| Nearest Ensembl: | ENSG00000107105 |
| Gene Name: | ELAV like RNA binding protein 2 |
| Gene Alias: | HEL-N1 |
| Gene Description: | ELAV like RNA binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.507463 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -7(CCTTTTAAGACG,+,0.00) |
