Difference between revisions of "TSS:Hg 100323.1"
From referenceTSS
| Line 2: | Line 2: | ||
|PLA2P= | |PLA2P= | ||
|PLAP= | |PLAP= | ||
| − | |all_trans= | + | |all_trans=NM_001321546:0 AL133608:0 AF145020:195 ENST00000397292.8:214 NM_001031689:214 ENST00000520884.5:223 AK002143:223 AK001642:283 AK022761:308 BC032551:315 AB385043:408 EU176453:409 EU176795:409 KJ898010:410 ENST00000523212.1:473 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=8 |
|end=26947475 | |end=26947475 | ||
|end_of_center_position=26947466 | |end_of_center_position=26947466 | ||
|entrez_id=9373 | |entrez_id=9373 | ||
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
| − | |gene_alias=DOA1 | + | |gene_alias=DOA1|NDMSBA|PLA2P|PLAP |
|gene_description=phospholipase A2 activating protein | |gene_description=phospholipase A2 activating protein | ||
|gene_id=9373 | |gene_id=9373 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:9043 | |hgnc_mgi_id=HGNC:9043 | ||
|nearest_ensembl=ENSG00000137055 | |nearest_ensembl=ENSG00000137055 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001321546 |
|nearest_refseq=NM_004253 | |nearest_refseq=NM_004253 | ||
|nearest_unigene=Hs.27182 | |nearest_unigene=Hs.27182 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=26947455 | |start=26947455 | ||
|start_of_center_position=26947465 | |start_of_center_position=26947465 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001321546 AL133608 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100323.1 | |tss_id=hg_100323.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 14:22, 14 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 26947465 |
|---|---|
| End of the center position in the TSS region: | 26947466 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001321546 AL133608 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | NM_001321546:0 AL133608:0 AF145020:195 ENST00000397292.8:214 NM_001031689:214 ENST00000520884.5:223 AK002143:223 AK001642:283 AK022761:308 BC032551:315 AB385043:408 EU176453:409 EU176795:409 KJ898010:410 ENST00000523212.1:473 |
TATA-Box annotation
| Distance to TSS: | 8 |
|---|---|
| Nearest PromoterID: | NM_001321546 |
| Entrez ID: | 9373 |
| Nearest Unigene: | Hs.27182 |
| Nearest Refseq: | NM_004253 |
| Nearest Ensembl: | ENSG00000137055 |
| Gene Name: | phospholipase A2 activating protein |
| Gene Alias: | DOA1 |
| Gene Description: | phospholipase A2 activating protein |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
