Difference between revisions of "TSS:Hg 100356.1"
From referenceTSS
| Line 3: | Line 3: | ||
|FTDALS= | |FTDALS= | ||
|FTDALS1= | |FTDALS1= | ||
| − | |all_trans=AL832229:-124 ENST00000488117.5:-125 | + | |all_trans=AL832229:-124 ENST00000488117.5:-125 AL832467:-125 ENST00000644136.1:-134 ENST00000380003.8:-158 NM_018325:-158 AK291425:-160 ENST00000673600.1:-171 ENST00000379995.1:-432 ENST00000647196.1:-496 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=-124 | |distance=-124 | ||
| − | |distance_to_tss= | + | |distance_to_tss=168 |
|end=27573323 | |end=27573323 | ||
|end_of_center_position=27573313 | |end_of_center_position=27573313 | ||
|entrez_id=203228 | |entrez_id=203228 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=ALSFTD | + | |gene_alias=ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 |
| − | |gene_description= | + | |gene_description=C9orf72-SMCR8 complex subunit |
|gene_id=203228 | |gene_id=203228 | ||
| − | |gene_name= | + | |gene_name=C9orf72-SMCR8 complex subunit |
|gene_source=HGNC:28337 | |gene_source=HGNC:28337 | ||
|gene_symbol=C9orf72 | |gene_symbol=C9orf72 | ||
| − | |gene_synonyms=MGC23980 | + | |gene_synonyms=DENND9 DENNL72 MGC23980 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:28337 | |hgnc_mgi_id=HGNC:28337 | ||
Revision as of 15:17, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 27573312 |
|---|---|
| End of the center position in the TSS region: | 27573313 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AL832229 |
|---|---|
| Distance: | -124 |
| Num_trans: | 10 |
| All_trans: | AL832229:-124 ENST00000488117.5:-125 AL832467:-125 ENST00000644136.1:-134 ENST00000380003.8:-158 NM_018325:-158 AK291425:-160 ENST00000673600.1:-171 ENST00000379995.1:-432 ENST00000647196.1:-496 |
TATA-Box annotation
| Distance to TSS: | 168 |
|---|---|
| Nearest PromoterID: | NM_018325 |
| Entrez ID: | 203228 |
| Nearest Unigene: | Hs.493639 |
| Nearest Refseq: | NM_018325 |
| Nearest Ensembl: | ENSG00000147894 |
| Gene Name: | C9orf72-SMCR8 complex subunit |
| Gene Alias: | ALSFTD |
| Gene Description: | C9orf72-SMCR8 complex subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
