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Difference between revisions of "TSS:Hg 10036.1"

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Line 8: Line 8:
 
|WSL-1=
 
|WSL-1=
 
|WSL-LR=
 
|WSL-LR=
−
|all_trans=ENST00000414040.6:16 ENST00000351748.7:16 ENST00000348333.7:16 ENST00000502588.5:16 ENST00000502730.5:16 ENST00000510563.5:16 ENST00000461703.6:16 uc001ang.4:16 uc001ana.4:16 uc057buu.1:16 uc057buv.1:16 uc057buw.1:16 uc057bux.1:16 uc057bvc.1:16 U72763:16 U78029:16 U94501:16 U94502:16 U94503:16 U94504:16 U94505:16 U94506:16 U94507:16 U94508:16 U94509:16 U94510:16 HQ258574:16 AB590587:16 AB308321:16 ENST00000513135.5:24 ENST00000453341.1:24 uc057bur.1:24 uc057bvd.1:24 U75380:24 U75381:24 U94512:24 U83597:32 U83598:32 ENST00000485036.5:-46 ENST00000480393.5:-46 ENST00000377782.7:-46 ENST00000351959.9:-46 uc001anh.4:-46 uc057bus.1:-46 uc057but.1:-46 uc001anf.4:-46 AF026070:-46 AF026071:-46 Y09392:-46 BC117189:-46 BC143886:-46 ENST00000356876.7:-66 NM_148970:-66 NM_148967:-66 NM_148966:-66 NM_148965:-66 NM_003790:-66 NM_001039664:-66 uc001ane.4:-66 AY358309:-66 U74611:-66 ENST00000515145.1:265 uc057bve.1:265 ENST00000481401.5:493 uc057bvb.1:493
+
|all_trans=ENST00000348333.7:16 ENST00000351748.7:16 ENST00000414040.6:16 ENST00000502588.5:16 ENST00000502730.5:16 ENST00000510563.5:16 ENST00000461703.6:16 U72763:16 U78029:16 U94501:16 U94502:16 U94503:16 U94504:16 U94505:16 U94506:16 U94507:16 U94508:16 U94509:16 U94510:16 HQ258574:16 AB590587:16 AB308321:16 ENST00000513135.5:24 ENST00000453341.1:24 U75380:24 U75381:24 U94512:24 U83597:32 U83598:32 ENST00000356876.8:-44 NM_003790:-44 ENST00000377782.7:-46 ENST00000480393.5:-46 ENST00000485036.5:-46 ENST00000351959.9:-46 AF026070:-46 AF026071:-46 Y09392:-46 BC117189:-46 BC143886:-46 NM_148965:-66 NM_148970:-66 NM_148967:-66 NM_148966:-66 NM_001039664:-66 AY358309:-66 U74611:-66 ENST00000515145.1:265 ENST00000481401.5:493
 
|chr=chr1
 
|chr=chr1
 
|cpg_percent=0.135
 
|cpg_percent=0.135
Line 17: Line 17:
 
|entrez_id=8718
 
|entrez_id=8718
 
|gc_percent=0.766169
 
|gc_percent=0.766169
−
|gene_alias=APO-3
+
|gene_alias=APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR
 
|gene_description=TNF receptor superfamily member 25
 
|gene_description=TNF receptor superfamily member 25
 
|gene_id=8718
 
|gene_id=8718
−
|gene_name=tumor necrosis factor receptor superfamily member 25
+
|gene_name=TNF receptor superfamily member 25
 
|gene_source=HGNC:11910
 
|gene_source=HGNC:11910
 
|gene_symbol=TNFRSF25
 
|gene_symbol=TNFRSF25
Line 27: Line 27:
 
|hgnc_mgi_id=HGNC:11910
 
|hgnc_mgi_id=HGNC:11910
 
|nearest_ensembl=ENSG00000215788
 
|nearest_ensembl=ENSG00000215788
−
|nearest_promoter_id=NM_148965
+
|nearest_promoter_id=NM_148967
 
|nearest_refseq=NM_003790
 
|nearest_refseq=NM_003790
 
|nearest_unigene=Hs.462529
 
|nearest_unigene=Hs.462529
−
|num_trans=65
+
|num_trans=49
 
|species=human
 
|species=human
 
|start=6466122
 
|start=6466122
 
|start_of_center_position=6466125
 
|start_of_center_position=6466125
 
|strand=-
 
|strand=-
−
|transcript_name=ENST00000414040.6 ENST00000351748.7 ENST00000348333.7 ENST00000502588.5 ENST00000502730.5 ENST00000510563.5 ENST00000461703.6 uc001ang.4 uc001ana.4 uc057buu.1 uc057buv.1 uc057buw.1 uc057bux.1 uc057bvc.1 U72763 U78029 U94501 U94502 U94503 U94504 U94505 U94506 U94507 U94508 U94509 U94510 HQ258574 AB590587 AB308321
+
|transcript_name=ENST00000348333.7 ENST00000351748.7 ENST00000414040.6 ENST00000502588.5 ENST00000502730.5 ENST00000510563.5 ENST00000461703.6 U72763 U78029 U94501 U94502 U94503 U94504 U94505 U94506 U94507 U94508 U94509 U94510 HQ258574 AB590587 AB308321
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_10036.1
 
|tss_id=hg_10036.1

Revision as of 15:18, 15 June 2021

Basic information about the TSS

TSS ID:hg_10036.1
Species:human
Chr:chr1
TSS Classification:yes
Start:6466122
End:6466129
Strand:-
TSS Score:1
Start of the center position in the TSS region:6466125
End of the center position in the TSS region:6466126



Gene and protein annotation

Transcript_name:ENST00000348333.7 ENST00000351748.7 ENST00000414040.6 ENST00000502588.5 ENST00000502730.5 ENST00000510563.5 ENST00000461703.6 U72763 U78029 U94501 U94502 U94503 U94504 U94505 U94506 U94507 U94508 U94509 U94510 HQ258574 AB590587 AB308321
Distance:16
GeneID:8718
HGNC/MGI_ID:HGNC:11910
UniProt_ID:A5LIN1 Q93038
Gene_name:TNF receptor superfamily member 25
Gene_symbol:TNFRSF25
Gene_synonyms:APO-3 DDR3 DR3 LARD TR3 TRAMP WSL-1 WSL-LR
Gene_source:HGNC:11910



Transcript annotation

Transcript_name:ENST00000348333.7 ENST00000351748.7 ENST00000414040.6 ENST00000502588.5 ENST00000502730.5 ENST00000510563.5 ENST00000461703.6 U72763 U78029 U94501 U94502 U94503 U94504 U94505 U94506 U94507 U94508 U94509 U94510 HQ258574 AB590587 AB308321
Distance:16
Num_trans:49
All_trans:ENST00000348333.7:16 ENST00000351748.7:16 ENST00000414040.6:16 ENST00000502588.5:16 ENST00000502730.5:16 ENST00000510563.5:16 ENST00000461703.6:16 U72763:16 U78029:16 U94501:16 U94502:16 U94503:16 U94504:16 U94505:16 U94506:16 U94507:16 U94508:16 U94509:16 U94510:16 HQ258574:16 AB590587:16 AB308321:16 ENST00000513135.5:24 ENST00000453341.1:24 U75380:24 U75381:24 U94512:24 U83597:32 U83598:32 ENST00000356876.8:-44 NM_003790:-44 ENST00000377782.7:-46 ENST00000480393.5:-46 ENST00000485036.5:-46 ENST00000351959.9:-46 AF026070:-46 AF026071:-46 Y09392:-46 BC117189:-46 BC143886:-46 NM_148965:-66 NM_148970:-66 NM_148967:-66 NM_148966:-66 NM_001039664:-66 AY358309:-66 U74611:-66 ENST00000515145.1:265 ENST00000481401.5:493



TATA-Box annotation

Distance to TSS:69
Nearest PromoterID:NM_148967
Entrez ID:8718
Nearest Unigene:Hs.462529
Nearest Refseq:NM_003790
Nearest Ensembl:ENSG00000215788
Gene Name:TNF receptor superfamily member 25
Gene Alias:APO-3
Gene Description:TNF receptor superfamily member 25
Gene Type:protein-coding
CpG%:0.135
GC%:0.766169
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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