Difference between revisions of "TSS:Hg 10038.1"
From referenceTSS
| Line 8: | Line 8: | ||
|WSL-1= | |WSL-1= | ||
|WSL-LR= | |WSL-LR= | ||
| − | |all_trans=ENST00000487949.4 | + | |all_trans=ENST00000487949.4:0 AK091201:0 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| Line 17: | Line 17: | ||
|entrez_id=8718 | |entrez_id=8718 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=APO-3 | + | |gene_alias=APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR |
|gene_description=TNF receptor superfamily member 25 | |gene_description=TNF receptor superfamily member 25 | ||
|gene_id=57449 | |gene_id=57449 | ||
| Line 27: | Line 27: | ||
|hgnc_mgi_id=HGNC:29105 | |hgnc_mgi_id=HGNC:29105 | ||
|nearest_ensembl=ENSG00000215788 | |nearest_ensembl=ENSG00000215788 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_148966 |
|nearest_refseq=NM_003790 | |nearest_refseq=NM_003790 | ||
|nearest_unigene=Hs.462529 | |nearest_unigene=Hs.462529 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=6471570 | |start=6471570 | ||
|start_of_center_position=6471581 | |start_of_center_position=6471581 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000487949.4 | + | |transcript_name=ENST00000487949.4 AK091201 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10038.1 | |tss_id=hg_10038.1 | ||
Revision as of 15:18, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6471581 |
|---|---|
| End of the center position in the TSS region: | 6471582 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000487949.4 AK091201 |
|---|---|
| Distance: | 0 |
| Num_trans: | 2 |
| All_trans: | ENST00000487949.4:0 AK091201:0 |
TATA-Box annotation
| Distance to TSS: | -5387 |
|---|---|
| Nearest PromoterID: | NM_148966 |
| Entrez ID: | 8718 |
| Nearest Unigene: | Hs.462529 |
| Nearest Refseq: | NM_003790 |
| Nearest Ensembl: | ENSG00000215788 |
| Gene Name: | pleckstrin homology and RhoGEF domain containing G5 |
| Gene Alias: | APO-3 |
| Gene Description: | TNF receptor superfamily member 25 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
