Difference between revisions of "TSS:Hg 100393.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000379858.1:-378 AB045732:-378 AB045733:-378 AF098300:-378 ENST00000681750.1:-393 BC060884:-393 ENST00000360538.7:-411 NM_005802:-411 LF213878:-427 MA449455:-427 ENST00000680198.1:-428 LP895621:-428 NM_001195622:-453 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| Line 9: | Line 9: | ||
|entrez_id=100129250 | |entrez_id=100129250 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
| − | |gene_alias=C9orf133 | + | |gene_alias=C9orf133|TOPORS-AS1 |
| − | |gene_description= | + | |gene_description=small integral membrane protein 27 |
|gene_id=10210 | |gene_id=10210 | ||
| − | |gene_name= | + | |gene_name=TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase |
|gene_source=HGNC:21653 | |gene_source=HGNC:21653 | ||
|gene_symbol=TOPORS | |gene_symbol=TOPORS | ||
|gene_synonyms=LUN TP53BPL | |gene_synonyms=LUN TP53BPL | ||
| − | |gene_type= | + | |gene_type=protein-coding |
|hgnc_mgi_id=HGNC:21653 | |hgnc_mgi_id=HGNC:21653 | ||
|nearest_ensembl=ENSG00000235453 | |nearest_ensembl=ENSG00000235453 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_146063 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_001349118 |
|nearest_unigene=Hs.664395 | |nearest_unigene=Hs.664395 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=32552172 | |start=32552172 | ||
|start_of_center_position=32552173 | |start_of_center_position=32552173 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-60(CCTTTTAGAGAG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000379858.1 AB045732 AB045733 AF098300 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100393.1 | |tss_id=hg_100393.1 | ||
Revision as of 15:18, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 32552173 |
|---|---|
| End of the center position in the TSS region: | 32552174 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000379858.1 AB045732 AB045733 AF098300 |
|---|---|
| Distance: | -378 |
| Num_trans: | 13 |
| All_trans: | ENST00000379858.1:-378 AB045732:-378 AB045733:-378 AF098300:-378 ENST00000681750.1:-393 BC060884:-393 ENST00000360538.7:-411 NM_005802:-411 LF213878:-427 MA449455:-427 ENST00000680198.1:-428 LP895621:-428 NM_001195622:-453 |
TATA-Box annotation
| Distance to TSS: | -60 |
|---|---|
| Nearest PromoterID: | NR_146063 |
| Entrez ID: | 100129250 |
| Nearest Unigene: | Hs.664395 |
| Nearest Refseq: | NM_001349118 |
| Nearest Ensembl: | ENSG00000235453 |
| Gene Name: | TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase |
| Gene Alias: | C9orf133 |
| Gene Description: | small integral membrane protein 27 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -60(CCTTTTAGAGAG,+,0.00) |
