Difference between revisions of "TSS:Hg 100395.1"
From referenceTSS
| Line 3: | Line 3: | ||
|RP31= | |RP31= | ||
|TP53BPL= | |TP53BPL= | ||
| − | |all_trans=NM_005802:0 | + | |all_trans=ENST00000680198.1:0 ENST00000360538.7:0 NM_001195622:0 NM_005802:0 LP895621:0 LF213878:0 MA449455:0 ENST00000681750.1:12 BC060884:12 ENST00000379858.1:27 AB045732:27 AB045733:27 AF098300:27 LF354205:-232 MA589782:-232 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-18 |
|end=32552629 | |end=32552629 | ||
|end_of_center_position=32552605 | |end_of_center_position=32552605 | ||
|entrez_id=10210 | |entrez_id=10210 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| − | |gene_alias=LUN | + | |gene_alias=LUN|P53BP3|RP31|TP53BPL |
|gene_description=TOP1 binding arginine/serine rich protein | |gene_description=TOP1 binding arginine/serine rich protein | ||
|gene_id=10210 | |gene_id=10210 | ||
| − | |gene_name= | + | |gene_name=TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase |
|gene_source=HGNC:21653 | |gene_source=HGNC:21653 | ||
|gene_symbol=TOPORS | |gene_symbol=TOPORS | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:21653 | |hgnc_mgi_id=HGNC:21653 | ||
|nearest_ensembl=ENSG00000197579 | |nearest_ensembl=ENSG00000197579 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_005802 |
|nearest_refseq=NM_005802 | |nearest_refseq=NM_005802 | ||
|nearest_unigene=Hs.589962 | |nearest_unigene=Hs.589962 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=32552579 | |start=32552579 | ||
|start_of_center_position=32552604 | |start_of_center_position=32552604 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_005802 | + | |transcript_name=ENST00000680198.1 ENST00000360538.7 NM_001195622 NM_005802 LP895621 LF213878 MA449455 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100395.1 | |tss_id=hg_100395.1 | ||
Revision as of 15:18, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 32552604 |
|---|---|
| End of the center position in the TSS region: | 32552605 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000680198.1 ENST00000360538.7 NM_001195622 NM_005802 LP895621 LF213878 MA449455 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | ENST00000680198.1:0 ENST00000360538.7:0 NM_001195622:0 NM_005802:0 LP895621:0 LF213878:0 MA449455:0 ENST00000681750.1:12 BC060884:12 ENST00000379858.1:27 AB045732:27 AB045733:27 AF098300:27 LF354205:-232 MA589782:-232 |
TATA-Box annotation
| Distance to TSS: | -18 |
|---|---|
| Nearest PromoterID: | NM_005802 |
| Entrez ID: | 10210 |
| Nearest Unigene: | Hs.589962 |
| Nearest Refseq: | NM_005802 |
| Nearest Ensembl: | ENSG00000197579 |
| Gene Name: | TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase |
| Gene Alias: | LUN |
| Gene Description: | TOP1 binding arginine/serine rich protein |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
