Difference between revisions of "TSS:Hg 100506.1"
From referenceTSS
| Line 2: | Line 2: | ||
|NYD-SP22= | |NYD-SP22= | ||
|SMRP1= | |SMRP1= | ||
| − | |all_trans=ENST00000379124.5 | + | |all_trans=ENST00000379124.5:-7 ENST00000379126.7:-14 AK225981:14 AF367474:-14 ENST00000379127.1:-36 NM_147169:-65 NM_001252195:-65 NM_147168:-65 AK094751:-65 ENST00000379133.7:-76 |
|bA573M23.4= | |bA573M23.4= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance=-7 | |distance=-7 | ||
| − | |distance_to_tss= | + | |distance_to_tss=70 |
|end=34381524 | |end=34381524 | ||
|end_of_center_position=34381519 | |end_of_center_position=34381519 | ||
|entrez_id=84688 | |entrez_id=84688 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias=CBE1 | + | |gene_alias=CBE1|NYD-SP22|SMRP1|bA573M23.4 |
|gene_description=chromosome 9 open reading frame 24 | |gene_description=chromosome 9 open reading frame 24 | ||
|gene_id=84688 | |gene_id=84688 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:19919 | |hgnc_mgi_id=HGNC:19919 | ||
|nearest_ensembl=ENSG00000164972 | |nearest_ensembl=ENSG00000164972 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001252195 |
|nearest_refseq=NM_032596 | |nearest_refseq=NM_032596 | ||
|nearest_unigene=Hs.50334 | |nearest_unigene=Hs.50334 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=34381513 | |start=34381513 | ||
|start_of_center_position=34381518 | |start_of_center_position=34381518 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=13(ACCCCTAAAAGG,-,0.00) |
| − | |transcript_name=ENST00000379124.5 | + | |transcript_name=ENST00000379124.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100506.1 | |tss_id=hg_100506.1 | ||
Revision as of 15:21, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 34381518 |
|---|---|
| End of the center position in the TSS region: | 34381519 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000379124.5 |
|---|---|
| Distance: | -7 |
| Num_trans: | 10 |
| All_trans: | ENST00000379124.5:-7 ENST00000379126.7:-14 AK225981:14 AF367474:-14 ENST00000379127.1:-36 NM_147169:-65 NM_001252195:-65 NM_147168:-65 AK094751:-65 ENST00000379133.7:-76 |
TATA-Box annotation
| Distance to TSS: | 70 |
|---|---|
| Nearest PromoterID: | NM_001252195 |
| Entrez ID: | 84688 |
| Nearest Unigene: | Hs.50334 |
| Nearest Refseq: | NM_032596 |
| Nearest Ensembl: | ENSG00000164972 |
| Gene Name: | chromosome 9 open reading frame 24 |
| Gene Alias: | CBE1 |
| Gene Description: | chromosome 9 open reading frame 24 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 13(ACCCCTAAAAGG,-,0.00) |
