Difference between revisions of "TSS:Hg 100540.1"
From referenceTSS
| Line 6: | Line 6: | ||
|SR-BP1= | |SR-BP1= | ||
|SRBP= | |SRBP= | ||
| − | |all_trans= | + | |all_trans=ENST00000681409.1:0 NM_001282208:0 NM_001282209:0 NM_001282207:0 NM_001282206:0 NM_147157:0 NR_104108:0 ENST00000680730.1:2 ENST00000477726.1:2 AK130502:2 ENST00000497006.2:-13 ENST00000461426.1:15 ENST00000680244.1:18 ENST00000277010.9:24 ENST00000679597.1:24 ENST00000680104.1:24 NM_001282205:24 NM_005866:24 ENST00000680277.1:27 BC006307:34 U79528:40 AY633611:50 AK222899:56 AK291092:56 AK299130:58 ENST00000353468.4:67 U75283:67 BC007839:68 ENST00000378892.5:79 BC010104:79 BC004899:79 AK098451:86 KJ892987:114 AF226604:114 DQ644568:114 DQ647702:114 DQ656583:114 CR457075:114 DQ892881:114 DQ896130:114 KJ906030:114 ENST00000478146.1:399 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| Line 15: | Line 15: | ||
|entrez_id=10280 | |entrez_id=10280 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias=ALS16 | + | |gene_alias=ALS16|DSMA2|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R |
|gene_description=sigma non-opioid intracellular receptor 1 | |gene_description=sigma non-opioid intracellular receptor 1 | ||
|gene_id=10280 | |gene_id=10280 | ||
| Line 26: | Line 26: | ||
|hgnc_mgi_id=HGNC:8157 | |hgnc_mgi_id=HGNC:8157 | ||
|nearest_ensembl=ENSG00000147955 | |nearest_ensembl=ENSG00000147955 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_147157 |
|nearest_refseq=NM_005866 | |nearest_refseq=NM_005866 | ||
|nearest_unigene=Hs.522087 | |nearest_unigene=Hs.522087 | ||
| − | |num_trans= | + | |num_trans=42 |
|sigma1R= | |sigma1R= | ||
|species=human | |species=human | ||
| Line 35: | Line 35: | ||
|start_of_center_position=34637820 | |start_of_center_position=34637820 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000681409.1 NM_001282208 NM_001282209 NM_001282207 NM_001282206 NM_147157 NR_104108 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100540.1 | |tss_id=hg_100540.1 | ||
Revision as of 15:22, 15 June 2021
Basic information about the TSS
|
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| Start of the center position in the TSS region: | 34637820 |
|---|---|
| End of the center position in the TSS region: | 34637821 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000681409.1 NM_001282208 NM_001282209 NM_001282207 NM_001282206 NM_147157 NR_104108 |
|---|---|
| Distance: | 0 |
| Num_trans: | 42 |
| All_trans: | ENST00000681409.1:0 NM_001282208:0 NM_001282209:0 NM_001282207:0 NM_001282206:0 NM_147157:0 NR_104108:0 ENST00000680730.1:2 ENST00000477726.1:2 AK130502:2 ENST00000497006.2:-13 ENST00000461426.1:15 ENST00000680244.1:18 ENST00000277010.9:24 ENST00000679597.1:24 ENST00000680104.1:24 NM_001282205:24 NM_005866:24 ENST00000680277.1:27 BC006307:34 U79528:40 AY633611:50 AK222899:56 AK291092:56 AK299130:58 ENST00000353468.4:67 U75283:67 BC007839:68 ENST00000378892.5:79 BC010104:79 BC004899:79 AK098451:86 KJ892987:114 AF226604:114 DQ644568:114 DQ647702:114 DQ656583:114 CR457075:114 DQ892881:114 DQ896130:114 KJ906030:114 ENST00000478146.1:399 |
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_147157 |
| Entrez ID: | 10280 |
| Nearest Unigene: | Hs.522087 |
| Nearest Refseq: | NM_005866 |
| Nearest Ensembl: | ENSG00000147955 |
| Gene Name: | sigma non-opioid intracellular receptor 1 |
| Gene Alias: | ALS16 |
| Gene Description: | sigma non-opioid intracellular receptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
