Difference between revisions of "TSS:Hg 100645.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|LZIP= | |LZIP= | ||
| − | |all_trans=BC042923:0 AF177198:0 AF078828:0 ENST00000378192.2 | + | |all_trans=ENST00000314888.10:0 NM_006289:0 BC042923:0 AF177198:0 AF078828:0 LF354354:-2 MA589931:-2 ENST00000378192.2:19 BC020881:19 BC021005:-159 AB028950:-168 LF354355:-243 MA589932:-243 LF206432:-448 MA442009:-448 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=33 |
|end=35732202 | |end=35732202 | ||
|end_of_center_position=35732163 | |end_of_center_position=35732163 | ||
| − | |entrez_id= | + | |entrez_id=7094 |
|gc_percent=0.781095 | |gc_percent=0.781095 | ||
| − | |gene_alias= | + | |gene_alias=ILWEQ|TLN|talin-1 |
| − | |gene_description= | + | |gene_description=talin 1 |
|gene_id=7094 | |gene_id=7094 | ||
|gene_name=talin 1 | |gene_name=talin 1 | ||
| Line 19: | Line 19: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:11845 | |hgnc_mgi_id=HGNC:11845 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000137076 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_006289 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_006289 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.471014 |
| − | |num_trans= | + | |num_trans=15 |
|sLZIP= | |sLZIP= | ||
|species=human | |species=human | ||
| Line 29: | Line 29: | ||
|start_of_center_position=35732162 | |start_of_center_position=35732162 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=BC042923 AF177198 AF078828 | + | |transcript_name=ENST00000314888.10 NM_006289 BC042923 AF177198 AF078828 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100645.1 | |tss_id=hg_100645.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q9Y490 |
}} | }} | ||
Revision as of 15:24, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35732162 |
|---|---|
| End of the center position in the TSS region: | 35732163 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000314888.10 NM_006289 BC042923 AF177198 AF078828 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | ENST00000314888.10:0 NM_006289:0 BC042923:0 AF177198:0 AF078828:0 LF354354:-2 MA589931:-2 ENST00000378192.2:19 BC020881:19 BC021005:-159 AB028950:-168 LF354355:-243 MA589932:-243 LF206432:-448 MA442009:-448 |
TATA-Box annotation
| Distance to TSS: | 33 |
|---|---|
| Nearest PromoterID: | NM_006289 |
| Entrez ID: | 7094 |
| Nearest Unigene: | Hs.471014 |
| Nearest Refseq: | NM_006289 |
| Nearest Ensembl: | ENSG00000137076 |
| Gene Name: | talin 1 |
| Gene Alias: | ILWEQ |
| Gene Description: | talin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
