Difference between revisions of "TSS:Hg 10069.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000442889 | + | |all_trans=ENST00000442889.1:-437 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance=-437 | |distance=-437 | ||
| − | |distance_to_tss= | + | |distance_to_tss=577 |
|end=6784406 | |end=6784406 | ||
|end_of_center_position=6784404 | |end_of_center_position=6784404 | ||
| − | |entrez_id= | + | |entrez_id=110841581 |
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias= | + | |gene_alias=lncCAMTA1 |
| − | |gene_description= | + | |gene_description=CAMTA1 divergent transcript |
| − | |gene_name=CAMTA1 | + | |gene_id= |
| − | |gene_type= | + | |gene_name=CAMTA1 divergent transcript |
| − | |nearest_ensembl= | + | |gene_source=HGNC:53020 |
| − | |nearest_promoter_id= | + | |gene_symbol=CAMTA1-DT |
| − | |nearest_refseq= | + | |gene_synonyms=lncCAMTA1 |
| − | |nearest_unigene= | + | |gene_type=ncRNA |
| − | |num_trans= | + | |hgnc_mgi_id=HGNC:53020 |
| + | |nearest_ensembl= | ||
| + | |nearest_promoter_id=NR_149049 | ||
| + | |nearest_refseq=NR_149049 | ||
| + | |nearest_unigene= | ||
| + | |num_trans=1 | ||
|species=human | |species=human | ||
|start=6784400 | |start=6784400 | ||
|start_of_center_position=6784403 | |start_of_center_position=6784403 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000442889 | + | |transcript_name=ENST00000442889.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10069.1 | |tss_id=hg_10069.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 15:25, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 6784403 |
|---|---|
| End of the center position in the TSS region: | 6784404 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000442889.1 |
|---|---|
| Distance: | -437 |
| Num_trans: | 1 |
| All_trans: | ENST00000442889.1:-437 |
TATA-Box annotation
| Distance to TSS: | 577 |
|---|---|
| Nearest PromoterID: | NR_149049 |
| Entrez ID: | 110841581 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_149049 |
| Nearest Ensembl: | |
| Gene Name: | CAMTA1 divergent transcript |
| Gene Alias: | lncCAMTA1 |
| Gene Description: | CAMTA1 divergent transcript |
| Gene Type: | ncRNA |
| CpG%: | 0.12 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
