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Difference between revisions of "TSS:Hg 100721.1"

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{{TSSDetail
 
{{TSSDetail
 
|BSAP=
 
|BSAP=
−
|all_trans=NM_001280554:-2 NM_001280553:-2 NM_001280552:-2 NM_001280551:-2 NM_001280549:-2 NM_001280548:-2 NM_001280547:-2 NM_001280555:-2 NM_016734:-2 NM_001280556:-2 NM_001280550:-2 NR_103999:-2 NR_104000:-2 ENST00000358127.8:288 uc003zzo.3:288 M96944:367 ENST00000377853.6:432 ENST00000377840.6:432 ENST00000377852.6:432 ENST00000523241.5:432 ENST00000520154.5:432 uc064tbd.1:432 uc010mlo.3:432 uc010mlp.3:432 uc010mls.3:432 uc010mlr.3:432 AY463952:432 AY463953:432 AY463954:432 AY463955:432 AY463956:432 AY463957:432 ENST00000520281.5:442 ENST00000446742.5:442 ENST00000522003.5:442 ENST00000523145.5:442 ENST00000523493.5:442 ENST00000414447.5:442 ENST00000377847.6:442 uc011lpw.3:442 uc011lpz.3:442 uc011lpx.3:442 uc011lqc.3:442 uc011lqa.3:442 uc011lpy.3:442 uc064tbe.1:442 FJ626419:442 FJ626420:442 FJ626421:442 FJ626422:442 FJ626423:442 FJ626424:442 FJ626425:442 BC156189:442 BC156927:442 AB529192:442
+
|all_trans=ENST00000358127.9:205 ENST00000377852.7:205 ENST00000523241.6:205 NM_001280548:205 NM_001280556:205 NM_001280547:205 NR_104000:205 NM_016734:205 NM_001280550:205 NM_001280554:205 NM_001280553:205 NM_001280552:205 NM_001280551:205 NM_001280549:205 NM_001280555:205 NR_103999:205 ENST00000520154.6:288 M96944:367 ENST00000377853.6:432 ENST00000377840.6:432 AY463952:432 AY463953:432 AY463954:432 AY463955:432 AY463956:432 AY463957:432 ENST00000520281.5:442 ENST00000446742.5:442 ENST00000522003.5:442 ENST00000523145.5:442 ENST00000523493.5:442 ENST00000414447.5:442 ENST00000377847.6:442 FJ626419:442 FJ626420:442 FJ626421:442 FJ626422:442 FJ626423:442 FJ626424:442 FJ626425:442 BC156189:442 BC156927:442 AB529192:442
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.11
 
|cpg_percent=0.11
−
|distance=-2
+
|distance=205
−
|distance_to_tss=4
+
|distance_to_tss=-207
 
|end=37034477
 
|end=37034477
 
|end_of_center_position=37034475
 
|end_of_center_position=37034475
 
|entrez_id=5079
 
|entrez_id=5079
 
|gc_percent=0.726368
 
|gc_percent=0.726368
−
|gene_alias=ALL3
+
|gene_alias=ALL3|BSAP
 
|gene_description=paired box 5
 
|gene_description=paired box 5
 
|gene_id=5079
 
|gene_id=5079
Line 20: Line 20:
 
|hgnc_mgi_id=HGNC:8619
 
|hgnc_mgi_id=HGNC:8619
 
|nearest_ensembl=ENSG00000196092
 
|nearest_ensembl=ENSG00000196092
−
|nearest_promoter_id=NM_001280549
+
|nearest_promoter_id=NM_001280553
 
|nearest_refseq=NM_016734
 
|nearest_refseq=NM_016734
 
|nearest_unigene=Hs.654464
 
|nearest_unigene=Hs.654464
−
|num_trans=56
+
|num_trans=43
 
|species=human
 
|species=human
 
|start=37034472
 
|start=37034472
 
|start_of_center_position=37034474
 
|start_of_center_position=37034474
 
|strand=-
 
|strand=-
−
|tata_box="-34(CCCTATAAAAGT,-,0.00)"
+
|tata_box=-34(CCCTATAAAAGT,-,0.00)
−
|transcript_name=NM_001280554 NM_001280553 NM_001280552 NM_001280551 NM_001280549 NM_001280548 NM_001280547 NM_001280555 NM_016734 NM_001280556 NM_001280550 NR_103999 NR_104000
+
|transcript_name=ENST00000358127.9 ENST00000377852.7 ENST00000523241.6 NM_001280548 NM_001280556 NM_001280547 NR_104000 NM_016734 NM_001280550 NM_001280554 NM_001280553 NM_001280552 NM_001280551 NM_001280549 NM_001280555 NR_103999
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_100721.1
 
|tss_id=hg_100721.1
 
|tss_score=1
 
|tss_score=1
−
|uniprot_id=E7ES87 Q02548
+
|uniprot_id=E7EQT0 E7ES87 Q02548
 
}}
 
}}

Revision as of 15:26, 15 June 2021

Basic information about the TSS

TSS ID:hg_100721.1
Species:human
Chr:chr9
TSS Classification:yes
Start:37034472
End:37034477
Strand:-
TSS Score:1
Start of the center position in the TSS region:37034474
End of the center position in the TSS region:37034475



Gene and protein annotation

Transcript_name:ENST00000358127.9 ENST00000377852.7 ENST00000523241.6 NM_001280548 NM_001280556 NM_001280547 NR_104000 NM_016734 NM_001280550 NM_001280554 NM_001280553 NM_001280552 NM_001280551 NM_001280549 NM_001280555 NR_103999
Distance:205
GeneID:5079
HGNC/MGI_ID:HGNC:8619
UniProt_ID:E7EQT0 E7ES87 Q02548
Gene_name:paired box 5
Gene_symbol:PAX5
Gene_synonyms:BSAP
Gene_source:HGNC:8619



Transcript annotation

Transcript_name:ENST00000358127.9 ENST00000377852.7 ENST00000523241.6 NM_001280548 NM_001280556 NM_001280547 NR_104000 NM_016734 NM_001280550 NM_001280554 NM_001280553 NM_001280552 NM_001280551 NM_001280549 NM_001280555 NR_103999
Distance:205
Num_trans:43
All_trans:ENST00000358127.9:205 ENST00000377852.7:205 ENST00000523241.6:205 NM_001280548:205 NM_001280556:205 NM_001280547:205 NR_104000:205 NM_016734:205 NM_001280550:205 NM_001280554:205 NM_001280553:205 NM_001280552:205 NM_001280551:205 NM_001280549:205 NM_001280555:205 NR_103999:205 ENST00000520154.6:288 M96944:367 ENST00000377853.6:432 ENST00000377840.6:432 AY463952:432 AY463953:432 AY463954:432 AY463955:432 AY463956:432 AY463957:432 ENST00000520281.5:442 ENST00000446742.5:442 ENST00000522003.5:442 ENST00000523145.5:442 ENST00000523493.5:442 ENST00000414447.5:442 ENST00000377847.6:442 FJ626419:442 FJ626420:442 FJ626421:442 FJ626422:442 FJ626423:442 FJ626424:442 FJ626425:442 BC156189:442 BC156927:442 AB529192:442



TATA-Box annotation

Distance to TSS:-207
Nearest PromoterID:NM_001280553
Entrez ID:5079
Nearest Unigene:Hs.654464
Nearest Refseq:NM_016734
Nearest Ensembl:ENSG00000196092
Gene Name:paired box 5
Gene Alias:ALL3
Gene Description:paired box 5
Gene Type:protein-coding
CpG%:0.11
GC%:0.726368
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):-34(CCCTATAAAAGT,-,0.00)
Retrieved from "http://reftss.riken.jp/reftss-v3/index.php?title=TSS:Hg_100721.1&oldid=1080275"