Difference between revisions of "TSS:Hg 100747.1"
From referenceTSS
| Line 3: | Line 3: | ||
|RRP40= | |RRP40= | ||
|Rrp40p= | |Rrp40p= | ||
| − | |all_trans=AF151860:4 CU679169:-9 KJ893776:-9 KJ898800:-9 DQ891938:-9 DQ895125:-9 BC008880:-11 AB528623:-13 BC002437:-21 | + | |all_trans=AF151860:4 CU679169:-9 KJ893776:-9 KJ898800:-9 DQ891938:-9 DQ895125:-9 BC008880:-11 AB528623:-13 BC002437:-21 AK290864:-22 ENST00000679059.1:-24 ENST00000465229.5:-26 AK289571:-26 ENST00000327304.10:-29 ENST00000396521.3:-29 ENST00000678588.1:-29 NM_016042:-29 AF281132:-33 LF206448:-36 MA442025:-36 NM_001002269:-57 AF229833:232 ENST00000465860.6:276 ENST00000496910.1:276 ENST00000490516.5:308 |
|bA3J10.7= | |bA3J10.7= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=4 | |distance=4 | ||
| − | |distance_to_tss= | + | |distance_to_tss=36 |
|end=37785035 | |end=37785035 | ||
|end_of_center_position=37785028 | |end_of_center_position=37785028 | ||
|entrez_id=51010 | |entrez_id=51010 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| − | |gene_alias=CGI-102 | + | |gene_alias=CGI-102|PCH1B|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10 |
|gene_description=exosome component 3 | |gene_description=exosome component 3 | ||
|gene_id=51010 | |gene_id=51010 | ||
| Line 24: | Line 24: | ||
|hgnc_mgi_id=HGNC:17944 | |hgnc_mgi_id=HGNC:17944 | ||
|nearest_ensembl=ENSG00000107371 | |nearest_ensembl=ENSG00000107371 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_016042 |
|nearest_refseq=NM_016042 | |nearest_refseq=NM_016042 | ||
|nearest_unigene=Hs.602571 | |nearest_unigene=Hs.602571 | ||
| − | |num_trans= | + | |num_trans=25 |
|p10= | |p10= | ||
|species=human | |species=human | ||
Revision as of 15:27, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 37785027 |
|---|---|
| End of the center position in the TSS region: | 37785028 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AF151860 |
|---|---|
| Distance: | 4 |
| Num_trans: | 25 |
| All_trans: | AF151860:4 CU679169:-9 KJ893776:-9 KJ898800:-9 DQ891938:-9 DQ895125:-9 BC008880:-11 AB528623:-13 BC002437:-21 AK290864:-22 ENST00000679059.1:-24 ENST00000465229.5:-26 AK289571:-26 ENST00000327304.10:-29 ENST00000396521.3:-29 ENST00000678588.1:-29 NM_016042:-29 AF281132:-33 LF206448:-36 MA442025:-36 NM_001002269:-57 AF229833:232 ENST00000465860.6:276 ENST00000496910.1:276 ENST00000490516.5:308 |
TATA-Box annotation
| Distance to TSS: | 36 |
|---|---|
| Nearest PromoterID: | NM_016042 |
| Entrez ID: | 51010 |
| Nearest Unigene: | Hs.602571 |
| Nearest Refseq: | NM_016042 |
| Nearest Ensembl: | ENSG00000107371 |
| Gene Name: | exosome component 3 |
| Gene Alias: | CGI-102 |
| Gene Description: | exosome component 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
