Difference between revisions of "TSS:Hg 100836.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=CR936772:-302 ENST00000594708.1 | + | |all_trans=ENST00000670800.1:-125 ENST00000656832.1:256 CR936772:-302 ENST00000594708.1:-310 AK124136:-310 NR_039990:-318 BC040840:-318 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| − | |distance=- | + | |distance=-125 |
|distance_to_tss=326 | |distance_to_tss=326 | ||
|end=70258556 | |end=70258556 | ||
| Line 11: | Line 11: | ||
|gene_alias=MAMDC2-AS2 | |gene_alias=MAMDC2-AS2 | ||
|gene_description=SMC5 antisense RNA 1 (head to head) | |gene_description=SMC5 antisense RNA 1 (head to head) | ||
| − | |gene_id= | + | |gene_id= |
| − | |gene_name=SMC5 | + | |gene_name=SMC5 divergent transcript |
|gene_source=HGNC:48718 | |gene_source=HGNC:48718 | ||
| − | |gene_symbol=SMC5- | + | |gene_symbol=SMC5-DT |
|gene_synonyms=MAMDC2-AS2 | |gene_synonyms=MAMDC2-AS2 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_039990 | |nearest_refseq=NR_039990 | ||
|nearest_unigene=Hs.556816 | |nearest_unigene=Hs.556816 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=70258539 | |start=70258539 | ||
|start_of_center_position=70258547 | |start_of_center_position=70258547 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000670800.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100836.1 | |tss_id=hg_100836.1 | ||
Revision as of 15:29, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 70258547 |
|---|---|
| End of the center position in the TSS region: | 70258548 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000670800.1 |
|---|---|
| Distance: | -125 |
| Num_trans: | 7 |
| All_trans: | ENST00000670800.1:-125 ENST00000656832.1:256 CR936772:-302 ENST00000594708.1:-310 AK124136:-310 NR_039990:-318 BC040840:-318 |
TATA-Box annotation
| Distance to TSS: | 326 |
|---|---|
| Nearest PromoterID: | NR_039990 |
| Entrez ID: | 100507299 |
| Nearest Unigene: | Hs.556816 |
| Nearest Refseq: | NR_039990 |
| Nearest Ensembl: | |
| Gene Name: | SMC5 divergent transcript |
| Gene Alias: | MAMDC2-AS2 |
| Gene Description: | SMC5 antisense RNA 1 (head to head) |
| Gene Type: | ncRNA |
| CpG%: | 0.07 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
