Difference between revisions of "TSS:Hg 100936.1"
From referenceTSS
| Line 2: | Line 2: | ||
|CGI-67= | |CGI-67= | ||
|FAM108B1= | |FAM108B1= | ||
| − | |all_trans=BC044576:-53 | + | |all_trans=ENST00000333421.7:-53 NM_001025780:-53 BC044576:-53 LP896547:-92 LF385282:-92 MA620859:-92 NM_016014:-105 AK293060:-105 ENST00000377041.6:199 AF151825:225 BC038390:388 GQ900982:388 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 11: | Line 11: | ||
|entrez_id=51104 | |entrez_id=51104 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| − | |gene_alias=C9orf77 | + | |gene_alias=C9orf77|CGI-67|FAM108B1 |
|gene_description=abhydrolase domain containing 17B | |gene_description=abhydrolase domain containing 17B | ||
|gene_id=51104 | |gene_id=51104 | ||
| − | |gene_name=abhydrolase domain containing 17B | + | |gene_name=abhydrolase domain containing 17B, depalmitoylase |
|gene_source=HGNC:24278 | |gene_source=HGNC:24278 | ||
|gene_symbol=ABHD17B | |gene_symbol=ABHD17B | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:24278 | |hgnc_mgi_id=HGNC:24278 | ||
|nearest_ensembl=ENSG00000107362 | |nearest_ensembl=ENSG00000107362 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_016014 |
|nearest_refseq=NM_016014 | |nearest_refseq=NM_016014 | ||
|nearest_unigene=Hs.380389 | |nearest_unigene=Hs.380389 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=71911129 | |start=71911129 | ||
|start_of_center_position=71911134 | |start_of_center_position=71911134 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=BC044576 | + | |transcript_name=ENST00000333421.7 NM_001025780 BC044576 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100936.1 | |tss_id=hg_100936.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A384MEH9 Q5VST6 |
}} | }} | ||
Revision as of 15:31, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 71911134 |
|---|---|
| End of the center position in the TSS region: | 71911135 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000333421.7 NM_001025780 BC044576 |
|---|---|
| Distance: | -53 |
| Num_trans: | 12 |
| All_trans: | ENST00000333421.7:-53 NM_001025780:-53 BC044576:-53 LP896547:-92 LF385282:-92 MA620859:-92 NM_016014:-105 AK293060:-105 ENST00000377041.6:199 AF151825:225 BC038390:388 GQ900982:388 |
TATA-Box annotation
| Distance to TSS: | 110 |
|---|---|
| Nearest PromoterID: | NM_016014 |
| Entrez ID: | 51104 |
| Nearest Unigene: | Hs.380389 |
| Nearest Refseq: | NM_016014 |
| Nearest Ensembl: | ENSG00000107362 |
| Gene Name: | abhydrolase domain containing 17B, depalmitoylase |
| Gene Alias: | C9orf77 |
| Gene Description: | abhydrolase domain containing 17B |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
