Difference between revisions of "TSS:Hg 101052.1"
From referenceTSS
| Line 3: | Line 3: | ||
|C9orf65= | |C9orf65= | ||
|KIAA0367= | |KIAA0367= | ||
| − | |all_trans=ENST00000376717.6:0 ENST00000466266.6:0 ENST00000223609.10 | + | |all_trans=ENST00000376717.6:0 ENST00000466266.6:0 ENST00000223609.10:0 BC022571:0 AK298805:0 AK296269:0 AK299857:0 ENST00000488346.5:14 NM_001330680:-202 NM_001308050:-202 NM_001308049:-202 NM_001308051:-202 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 12: | Line 12: | ||
|entrez_id=158471 | |entrez_id=158471 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
| − | |gene_alias=BMCC1 | + | |gene_alias=BMCC1|BNIPXL|C9orf65|KIAA0367 |
| − | |gene_description=prune homolog 2 | + | |gene_description=prune homolog 2 with BCH domain |
|gene_id=158471 | |gene_id=158471 | ||
| − | |gene_name=prune homolog 2 | + | |gene_name=prune homolog 2 with BCH domain |
|gene_source=HGNC:25209 | |gene_source=HGNC:25209 | ||
|gene_symbol=PRUNE2 | |gene_symbol=PRUNE2 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:25209 | |hgnc_mgi_id=HGNC:25209 | ||
|nearest_ensembl=ENSG00000106772 | |nearest_ensembl=ENSG00000106772 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001308049 |
|nearest_refseq=NM_015225 | |nearest_refseq=NM_015225 | ||
|nearest_unigene=Hs.262857 | |nearest_unigene=Hs.262857 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=76692180 | |start=76692180 | ||
|start_of_center_position=76692196 | |start_of_center_position=76692196 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000376717.6 ENST00000466266.6 ENST00000223609.10 | + | |transcript_name=ENST00000376717.6 ENST00000466266.6 ENST00000223609.10 BC022571 AK298805 AK296269 AK299857 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101052.1 | |tss_id=hg_101052.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A0C4DFM3 B4DJW7 B4DSQ3 Q5JUB8 | + | |uniprot_id=A0A0C4DFM3 B4DJW7 B4DSQ3 Q5JUB8 |
}} | }} | ||
Revision as of 15:34, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 76692196 |
|---|---|
| End of the center position in the TSS region: | 76692197 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000376717.6 ENST00000466266.6 ENST00000223609.10 BC022571 AK298805 AK296269 AK299857 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENST00000376717.6:0 ENST00000466266.6:0 ENST00000223609.10:0 BC022571:0 AK298805:0 AK296269:0 AK299857:0 ENST00000488346.5:14 NM_001330680:-202 NM_001308050:-202 NM_001308049:-202 NM_001308051:-202 |
TATA-Box annotation
| Distance to TSS: | 218 |
|---|---|
| Nearest PromoterID: | NM_001308049 |
| Entrez ID: | 158471 |
| Nearest Unigene: | Hs.262857 |
| Nearest Refseq: | NM_015225 |
| Nearest Ensembl: | ENSG00000106772 |
| Gene Name: | prune homolog 2 with BCH domain |
| Gene Alias: | BMCC1 |
| Gene Description: | prune homolog 2 with BCH domain |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
