Difference between revisions of "TSS:Hg 101151.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AL136643:41 AK027556:46 BC039294:54 BC017289:54 AK027576:55 ENST00000257468.11 | + | |all_trans=ENST00000376395.9:40 NM_013438:40 NM_053067:40 AL136643:41 AK027556:46 BC039294:54 BC017289:54 AK027576:55 ENST00000257468.11:64 BC010066:65 AK074535:-195 AB035275:210 LF384925:-245 MA620502:-245 HM005532:285 AB528730:316 AF176069:319 AF293384:319 LF331823:357 MA567400:357 ENST00000529923.1:397 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| − | |distance= | + | |distance=40 |
| − | |distance_to_tss= | + | |distance_to_tss=-45 |
|end=83708008 | |end=83708008 | ||
|end_of_center_position=83708003 | |end_of_center_position=83708003 | ||
| − | |entrez_id= | + | |entrez_id=29979 |
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=- | + | |gene_alias=DA41{{!}}DSK2{{!}}PLIC-1{{!}}UBQN{{!}}XDRP1 |
| − | |gene_description= | + | |gene_description=ubiquilin 1 |
|gene_id=29979 | |gene_id=29979 | ||
|gene_name=ubiquilin 1 | |gene_name=ubiquilin 1 | ||
| Line 16: | Line 16: | ||
|gene_symbol=UBQLN1 | |gene_symbol=UBQLN1 | ||
|gene_synonyms=DA41 DSK2 PLIC-1 XDRP1 | |gene_synonyms=DA41 DSK2 PLIC-1 XDRP1 | ||
| − | |gene_type= | + | |gene_type=protein-coding |
|hgnc_mgi_id=HGNC:12508 | |hgnc_mgi_id=HGNC:12508 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000135018 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_053067 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_013438 |
|nearest_unigene=Hs.9589 | |nearest_unigene=Hs.9589 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=83707997 | |start=83707997 | ||
|start_of_center_position=83708002 | |start_of_center_position=83708002 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000376395.9 NM_013438 NM_053067 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101151.1 | |tss_id=hg_101151.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q9UMX0 |
}} | }} | ||
Revision as of 16:33, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 83708002 |
|---|---|
| End of the center position in the TSS region: | 83708003 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000376395.9 NM_013438 NM_053067 |
|---|---|
| Distance: | 40 |
| Num_trans: | 21 |
| All_trans: | ENST00000376395.9:40 NM_013438:40 NM_053067:40 AL136643:41 AK027556:46 BC039294:54 BC017289:54 AK027576:55 ENST00000257468.11:64 BC010066:65 AK074535:-195 AB035275:210 LF384925:-245 MA620502:-245 HM005532:285 AB528730:316 AF176069:319 AF293384:319 LF331823:357 MA567400:357 ENST00000529923.1:397 |
TATA-Box annotation
| Distance to TSS: | -45 |
|---|---|
| Nearest PromoterID: | NM_053067 |
| Entrez ID: | 29979 |
| Nearest Unigene: | Hs.9589 |
| Nearest Refseq: | NM_013438 |
| Nearest Ensembl: | ENSG00000135018 |
| Gene Name: | ubiquilin 1 |
| Gene Alias: | DA41|DSK2|PLIC-1|UBQN|XDRP1 |
| Gene Description: | ubiquilin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
