Difference between revisions of "TSS:Hg 101404.1"
From referenceTSS
| Line 5: | Line 5: | ||
|SPT1= | |SPT1= | ||
|SPTI= | |SPTI= | ||
| − | |all_trans=AK098344:0 ENST00000482632.5 | + | |all_trans=ENST00000262554.7:0 NM_001368273:0 NM_001281303:0 NM_006415:0 NM_001368272:0 NM_178324:0 AK098344:0 LF384915:0 MA620492:0 ENST00000482632.5:2 ENST00000337841.4:3 BC007085:3 ENST00000488921.5:4 BC068537:8 AK299153:8 ENST00000644140.1:12 AK291546:12 ENST00000646534.1:13 Y08685:16 KJ902128:16 CU686661:16 KJ898242:16 AB209757:30 ENST00000461132.1:48 LF331673:367 MA567250:367 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=8 |
|end=92115424 | |end=92115424 | ||
|end_of_center_position=92115405 | |end_of_center_position=92115405 | ||
|entrez_id=10558 | |entrez_id=10558 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=HSAN1 | + | |gene_alias=HSAN1{{!}}HSN1{{!}}LBC1{{!}}LCB1{{!}}SPT1{{!}}SPTI |
|gene_description=serine palmitoyltransferase long chain base subunit 1 | |gene_description=serine palmitoyltransferase long chain base subunit 1 | ||
|gene_id=10558 | |gene_id=10558 | ||
| Line 24: | Line 24: | ||
|hgnc_mgi_id=HGNC:11277 | |hgnc_mgi_id=HGNC:11277 | ||
|nearest_ensembl=ENSG00000090054 | |nearest_ensembl=ENSG00000090054 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001368273 |
|nearest_refseq=NM_006415 | |nearest_refseq=NM_006415 | ||
|nearest_unigene=Hs.90458 | |nearest_unigene=Hs.90458 | ||
| − | |num_trans= | + | |num_trans=26 |
|species=human | |species=human | ||
|start=92115385 | |start=92115385 | ||
|start_of_center_position=92115404 | |start_of_center_position=92115404 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=AK098344 | + | |transcript_name=ENST00000262554.7 NM_001368273 NM_001281303 NM_006415 NM_001368272 NM_178324 AK098344 LF384915 MA620492 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101404.1 | |tss_id=hg_101404.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A024R277 O15269 Q6NUL7 |
}} | }} | ||
Revision as of 16:39, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 92115404 |
|---|---|
| End of the center position in the TSS region: | 92115405 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000262554.7 NM_001368273 NM_001281303 NM_006415 NM_001368272 NM_178324 AK098344 LF384915 MA620492 |
|---|---|
| Distance: | 0 |
| Num_trans: | 26 |
| All_trans: | ENST00000262554.7:0 NM_001368273:0 NM_001281303:0 NM_006415:0 NM_001368272:0 NM_178324:0 AK098344:0 LF384915:0 MA620492:0 ENST00000482632.5:2 ENST00000337841.4:3 BC007085:3 ENST00000488921.5:4 BC068537:8 AK299153:8 ENST00000644140.1:12 AK291546:12 ENST00000646534.1:13 Y08685:16 KJ902128:16 CU686661:16 KJ898242:16 AB209757:30 ENST00000461132.1:48 LF331673:367 MA567250:367 |
TATA-Box annotation
| Distance to TSS: | 8 |
|---|---|
| Nearest PromoterID: | NM_001368273 |
| Entrez ID: | 10558 |
| Nearest Unigene: | Hs.90458 |
| Nearest Refseq: | NM_006415 |
| Nearest Ensembl: | ENSG00000090054 |
| Gene Name: | serine palmitoyltransferase long chain base subunit 1 |
| Gene Alias: | HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI |
| Gene Description: | serine palmitoyltransferase long chain base subunit 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
