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Difference between revisions of "TSS:Hg 101414.1"

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Line 5: Line 5:
 
|IRS=
 
|IRS=
 
|PRO0785=
 
|PRO0785=
−
|all_trans=ENST00000375643.7:0 ENST00000443024.6:0 ENST00000447699.6:0 ENST00000395554.7:0 ENST00000490438.1:0 uc004art.4:0 uc064ugz.1:0 uc010mqr.5:0 uc064uhg.1:0 uc064uhi.1:0 BX647236:0 BX647430:0 BX537417:0 BX647071:0 BX648567:0 AK293014:0 U04953:0 AK301272:0 BX537429:0 BX538109:0 AK308202:0 D28473:1 AB209234:10 ENST00000627121.2:-34 ENST00000430417.1:34 NM_013417:-34 NM_002161:-34 NR_073446:-34 uc064ugy.1:-34 uc064uhj.1:34
+
|all_trans=ENST00000443024.7:0 ENST00000375643.7:0 ENST00000627121.3:0 ENST00000490438.1:0 NM_001378586:0 NM_001378584:0 NM_001378574:0 NM_001378575:0 NM_002161:0 NM_001378583:0 NR_073446:0 NM_001378576:0 NM_001378579:0 NM_001378585:0 NM_013417:0 NM_001378580:0 NM_001378582:0 NM_001378578:0 NM_001378577:0 NM_001378569:0 NM_001378571:0 NM_001378572:0 NM_001378573:0 NM_001374299:0 NM_001374301:0 NM_001374300:0 BX647236:0 BX647430:0 BX537417:0 BX647071:0 BX648567:0 AK293014:0 U04953:0 AK301272:0 BX537429:0 BX538109:0 AK308202:0 D28473:1 AB209234:10 ENST00000447699.7:-34 ENST00000430417.1:34
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.09
 
|cpg_percent=0.09
Line 14: Line 14:
 
|entrez_id=3376
 
|entrez_id=3376
 
|gc_percent=0.656716
 
|gc_percent=0.656716
−
|gene_alias=GRIDHH
+
|gene_alias=GRIDHH{{!}}IARS1{{!}}ILERS{{!}}ILRS{{!}}IRS{{!}}PRO0785
 
|gene_description=isoleucyl-tRNA synthetase
 
|gene_description=isoleucyl-tRNA synthetase
 
|gene_id=3376
 
|gene_id=3376
−
|gene_name=isoleucyl-tRNA synthetase
+
|gene_name=isoleucyl-tRNA synthetase 1
 
|gene_source=HGNC:5330
 
|gene_source=HGNC:5330
−
|gene_symbol=IARS
+
|gene_symbol=IARS1
−
|gene_synonyms=IARS1 ILRS
+
|gene_synonyms=ILRS
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 
|hgnc_mgi_id=HGNC:5330
 
|hgnc_mgi_id=HGNC:5330
Line 27: Line 27:
 
|nearest_refseq=NM_002161
 
|nearest_refseq=NM_002161
 
|nearest_unigene=Hs.445403
 
|nearest_unigene=Hs.445403
−
|num_trans=30
+
|num_trans=41
 
|species=human
 
|species=human
 
|start=92293674
 
|start=92293674
 
|start_of_center_position=92293698
 
|start_of_center_position=92293698
 
|strand=-
 
|strand=-
−
|transcript_name=ENST00000375643.7 ENST00000443024.6 ENST00000447699.6 ENST00000395554.7 ENST00000490438.1 uc004art.4 uc064ugz.1 uc010mqr.5 uc064uhg.1 uc064uhi.1 BX647236 BX647430 BX537417 BX647071 BX648567 AK293014 U04953 AK301272 BX537429 BX538109 AK308202
+
|transcript_name=ENST00000443024.7 ENST00000375643.7 ENST00000627121.3 ENST00000490438.1 NM_001378586 NM_001378584 NM_001378574 NM_001378575 NM_002161 NM_001378583 NR_073446 NM_001378576 NM_001378579 NM_001378585 NM_013417 NM_001378580 NM_001378582 NM_001378578 NM_001378577 NM_001378569 NM_001378571 NM_001378572 NM_001378573 NM_001374299 NM_001374301 NM_001374300 BX647236 BX647430 BX537417 BX647071 BX648567 AK293014 U04953 AK301272 BX537429 BX538109 AK308202
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_101414.1
 
|tss_id=hg_101414.1
 
|tss_score=1
 
|tss_score=1
−
|uniprot_id=A0A0A0MSX9 B4DVX2 J3KR24 P41252 Q5TCD1 Q7Z355 Q7Z3U5
+
|uniprot_id=A0A0A0MSX9 B4DVX2 P41252 Q5TCC6 Q7L4K8 Q7Z355 Q7Z3U5
 
}}
 
}}

Revision as of 16:39, 15 June 2021

Basic information about the TSS

TSS ID:hg_101414.1
Species:human
Chr:chr9
TSS Classification:yes
Start:92293674
End:92293722
Strand:-
TSS Score:1
Start of the center position in the TSS region:92293698
End of the center position in the TSS region:92293699



Gene and protein annotation

Transcript_name:ENST00000443024.7 ENST00000375643.7 ENST00000627121.3 ENST00000490438.1 NM_001378586 NM_001378584 NM_001378574 NM_001378575 NM_002161 NM_001378583 NR_073446 NM_001378576 NM_001378579 NM_001378585 NM_013417 NM_001378580 NM_001378582 NM_001378578 NM_001378577 NM_001378569 NM_001378571 NM_001378572 NM_001378573 NM_001374299 NM_001374301 NM_001374300 BX647236 BX647430 BX537417 BX647071 BX648567 AK293014 U04953 AK301272 BX537429 BX538109 AK308202
Distance:0
GeneID:3376
HGNC/MGI_ID:HGNC:5330
UniProt_ID:A0A0A0MSX9 B4DVX2 P41252 Q5TCC6 Q7L4K8 Q7Z355 Q7Z3U5
Gene_name:isoleucyl-tRNA synthetase 1
Gene_symbol:IARS1
Gene_synonyms:ILRS
Gene_source:HGNC:5330



Transcript annotation

Transcript_name:ENST00000443024.7 ENST00000375643.7 ENST00000627121.3 ENST00000490438.1 NM_001378586 NM_001378584 NM_001378574 NM_001378575 NM_002161 NM_001378583 NR_073446 NM_001378576 NM_001378579 NM_001378585 NM_013417 NM_001378580 NM_001378582 NM_001378578 NM_001378577 NM_001378569 NM_001378571 NM_001378572 NM_001378573 NM_001374299 NM_001374301 NM_001374300 BX647236 BX647430 BX537417 BX647071 BX648567 AK293014 U04953 AK301272 BX537429 BX538109 AK308202
Distance:0
Num_trans:41
All_trans:ENST00000443024.7:0 ENST00000375643.7:0 ENST00000627121.3:0 ENST00000490438.1:0 NM_001378586:0 NM_001378584:0 NM_001378574:0 NM_001378575:0 NM_002161:0 NM_001378583:0 NR_073446:0 NM_001378576:0 NM_001378579:0 NM_001378585:0 NM_013417:0 NM_001378580:0 NM_001378582:0 NM_001378578:0 NM_001378577:0 NM_001378569:0 NM_001378571:0 NM_001378572:0 NM_001378573:0 NM_001374299:0 NM_001374301:0 NM_001374300:0 BX647236:0 BX647430:0 BX537417:0 BX647071:0 BX648567:0 AK293014:0 U04953:0 AK301272:0 BX537429:0 BX538109:0 AK308202:0 D28473:1 AB209234:10 ENST00000447699.7:-34 ENST00000430417.1:34



TATA-Box annotation

Distance to TSS:58
Nearest PromoterID:NM_013417
Entrez ID:3376
Nearest Unigene:Hs.445403
Nearest Refseq:NM_002161
Nearest Ensembl:ENSG00000196305
Gene Name:isoleucyl-tRNA synthetase 1
Gene Alias:GRIDHH|IARS1|ILERS|ILRS|IRS|PRO0785
Gene Description:isoleucyl-tRNA synthetase
Gene Type:protein-coding
CpG%:0.09
GC%:0.656716
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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