Difference between revisions of "TSS:Hg 101578.1"
From referenceTSS
| Line 6: | Line 6: | ||
|PTCH= | |PTCH= | ||
|PTCH11= | |PTCH11= | ||
| − | |all_trans=ENST00000437951.5:-8 ENST00000375274.6:-8 | + | |all_trans=ENST00000437951.5:-8 ENST00000375274.6:-8 AB189436:-8 AB189437:-8 NM_001083602:-14 NM_001083603:-14 NM_001354919:-14 ENST00000430669.6:-100 ENST00000468211.6:-100 BC043542:-100 ENST00000551623.1:290 ENST00000551425.1:290 AB239329:290 AB212827:290 AB212828:290 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| Line 15: | Line 15: | ||
|entrez_id=5727 | |entrez_id=5727 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=BCNS | + | |gene_alias=BCNS{{!}}NBCCS{{!}}PTC{{!}}PTC1{{!}}PTCH |
|gene_description=patched 1 | |gene_description=patched 1 | ||
|gene_id=5727 | |gene_id=5727 | ||
| Line 25: | Line 25: | ||
|hgnc_mgi_id=HGNC:9585 | |hgnc_mgi_id=HGNC:9585 | ||
|nearest_ensembl=ENSG00000185920 | |nearest_ensembl=ENSG00000185920 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001083603 |
|nearest_refseq=NM_000264 | |nearest_refseq=NM_000264 | ||
|nearest_unigene=Hs.494538 | |nearest_unigene=Hs.494538 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=95516947 | |start=95516947 | ||
|start_of_center_position=95516952 | |start_of_center_position=95516952 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000437951.5 ENST00000375274.6 | + | |transcript_name=ENST00000437951.5 ENST00000375274.6 AB189436 AB189437 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101578.1 | |tss_id=hg_101578.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q13635 | + | |uniprot_id=Q13635 |
}} | }} | ||
Revision as of 16:43, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 95516952 |
|---|---|
| End of the center position in the TSS region: | 95516953 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000437951.5 ENST00000375274.6 AB189436 AB189437 |
|---|---|
| Distance: | -8 |
| Num_trans: | 15 |
| All_trans: | ENST00000437951.5:-8 ENST00000375274.6:-8 AB189436:-8 AB189437:-8 NM_001083602:-14 NM_001083603:-14 NM_001354919:-14 ENST00000430669.6:-100 ENST00000468211.6:-100 BC043542:-100 ENST00000551623.1:290 ENST00000551425.1:290 AB239329:290 AB212827:290 AB212828:290 |
TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NM_001083603 |
| Entrez ID: | 5727 |
| Nearest Unigene: | Hs.494538 |
| Nearest Refseq: | NM_000264 |
| Nearest Ensembl: | ENSG00000185920 |
| Gene Name: | patched 1 |
| Gene Alias: | BCNS|NBCCS|PTC|PTC1|PTCH |
| Gene Description: | patched 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
