Difference between revisions of "TSS:Hg 101584.1"
From referenceTSS
| Line 3: | Line 3: | ||
|RAD26L= | |RAD26L= | ||
|SR278= | |SR278= | ||
| − | |all_trans=ENST00000433656.2:34 | + | |all_trans=ENST00000660143.1:-7 ENST00000433656.2:34 AF170307:34 ENST00000657579.1:-39 ENST00000429781.1:-43 ENST00000670189.1:-43 AK092137:-43 ENST00000671508.1:53 ENST00000427259.1:244 ENST00000660645.1:-416 ENST00000321517.3:-432 AF194971:-432 NR_023390:-433 NR_023389:-433 AL389954:-433 ENST00000669049.1:435 ENST00000448465.1:444 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance= | + | |distance=-7 |
| − | |distance_to_tss=- | + | |distance_to_tss=-162 |
|end=95875544 | |end=95875544 | ||
|end_of_center_position=95875529 | |end_of_center_position=95875529 | ||
|entrez_id=375748 | |entrez_id=375748 | ||
|gc_percent=0.59204 | |gc_percent=0.59204 | ||
| − | |gene_alias=BMFS2 | + | |gene_alias=BMFS2{{!}}C9orf102{{!}}RAD26L{{!}}SR278 |
|gene_description=ERCC excision repair 6 like 2 | |gene_description=ERCC excision repair 6 like 2 | ||
|gene_id=100128782 | |gene_id=100128782 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:27858 | |hgnc_mgi_id=HGNC:27858 | ||
|nearest_ensembl=ENSG00000182150 | |nearest_ensembl=ENSG00000182150 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_020207 |
|nearest_refseq=NM_020207 | |nearest_refseq=NM_020207 | ||
|nearest_unigene=Hs.432364 | |nearest_unigene=Hs.432364 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=95875513 | |start=95875513 | ||
|start_of_center_position=95875528 | |start_of_center_position=95875528 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000660143.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101584.1 | |tss_id=hg_101584.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:43, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 95875528 |
|---|---|
| End of the center position in the TSS region: | 95875529 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000660143.1 |
|---|---|
| Distance: | -7 |
| Num_trans: | 17 |
| All_trans: | ENST00000660143.1:-7 ENST00000433656.2:34 AF170307:34 ENST00000657579.1:-39 ENST00000429781.1:-43 ENST00000670189.1:-43 AK092137:-43 ENST00000671508.1:53 ENST00000427259.1:244 ENST00000660645.1:-416 ENST00000321517.3:-432 AF194971:-432 NR_023390:-433 NR_023389:-433 AL389954:-433 ENST00000669049.1:435 ENST00000448465.1:444 |
TATA-Box annotation
| Distance to TSS: | -162 |
|---|---|
| Nearest PromoterID: | NM_020207 |
| Entrez ID: | 375748 |
| Nearest Unigene: | Hs.432364 |
| Nearest Refseq: | NM_020207 |
| Nearest Ensembl: | ENSG00000182150 |
| Gene Name: | long intergenic non-protein coding RNA 476 |
| Gene Alias: | BMFS2|C9orf102|RAD26L|SR278 |
| Gene Description: | ERCC excision repair 6 like 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
