Difference between revisions of "TSS:Hg 101940.1"
From referenceTSS
| Line 4: | Line 4: | ||
|SEL-OB= | |SEL-OB= | ||
|SELOB= | |SELOB= | ||
| − | |all_trans=ENST00000401783.6:121 ENST00000374461.1 | + | |all_trans=ENST00000401783.6:121 ENST00000374461.1:121 BC030816:121 AK122605:125 ENST00000374469.6:260 NM_153366:260 AJ619977:295 AY243503:295 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance=121 | |distance=121 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-270 |
|end=110580022 | |end=110580022 | ||
|end_of_center_position=110580012 | |end_of_center_position=110580012 | ||
|entrez_id=79987 | |entrez_id=79987 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
| − | |gene_alias=C9orf13 | + | |gene_alias=C9orf13{{!}}CCP22{{!}}POLYDOM{{!}}SEL-OB{{!}}SELOB |
| − | |gene_description= | + | |gene_description=sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 |
|gene_id=79987 | |gene_id=79987 | ||
| − | |gene_name= | + | |gene_name=sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 |
|gene_source=HGNC:15985 | |gene_source=HGNC:15985 | ||
|gene_symbol=SVEP1 | |gene_symbol=SVEP1 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_153366 | |nearest_refseq=NM_153366 | ||
|nearest_unigene=Hs.522334 | |nearest_unigene=Hs.522334 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=110580000 | |start=110580000 | ||
|start_of_center_position=110580011 | |start_of_center_position=110580011 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000401783.6 ENST00000374461.1 | + | |transcript_name=ENST00000401783.6 ENST00000374461.1 BC030816 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_101940.1 | |tss_id=hg_101940.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A0A0MSD0 Q4LDE5 |
}} | }} | ||
Revision as of 16:51, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 110580011 |
|---|---|
| End of the center position in the TSS region: | 110580012 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000401783.6 ENST00000374461.1 BC030816 |
|---|---|
| Distance: | 121 |
| Num_trans: | 8 |
| All_trans: | ENST00000401783.6:121 ENST00000374461.1:121 BC030816:121 AK122605:125 ENST00000374469.6:260 NM_153366:260 AJ619977:295 AY243503:295 |
TATA-Box annotation
| Distance to TSS: | -270 |
|---|---|
| Nearest PromoterID: | NM_153366 |
| Entrez ID: | 79987 |
| Nearest Unigene: | Hs.522334 |
| Nearest Refseq: | NM_153366 |
| Nearest Ensembl: | ENSG00000165124 |
| Gene Name: | sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 |
| Gene Alias: | C9orf13|CCP22|POLYDOM|SEL-OB|SELOB |
| Gene Description: | sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
